Lacipirellula parvula: PLANPX_1758
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Entry
PLANPX_1758 CDS
T06590
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
lpav
Lacipirellula parvula
Pathway
lpav03410
Base excision repair
lpav03430
Mismatch repair
lpav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lpav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PLANPX_1758
03430 Mismatch repair
PLANPX_1758
03440 Homologous recombination
PLANPX_1758
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpav03400
]
PLANPX_1758
DNA repair and recombination proteins [BR:
lpav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PLANPX_1758
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PLANPX_1758
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PLANPX_1758
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
UCR_Fe-S_N
ThiG
Motif
Other DBs
NCBI-ProteinID:
BBO32146
UniProt:
A0A5K7XCN5
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All DBs
Position
1986688..1988436
Genome browser
AA seq
582 aa
AA seq
DB search
MPKHWRLAPHDPARIADLERAAGVPSLVAHLLLSRGIHDPADVRQFLDPKLTGLRDPELL
PGAAAAADLLYQAYRAKRRITVYGDYDADGMTATAILVRCLRMLDAQVDFYVPHRIDEGY
GVNSEAIAKLAEQGADVVVTVDCGICSVAEARLAKELGLTLIVTDHHQMDAELPDAAALV
HPALPGSEYPFKGLCGAAVAFKLAWALCQRVAENKRVNERMRQFLLQAVGLAAIGTVADV
VPLIDENRILVRHGLQSLTAYPTIGMSALMRQIKLHEKHALECEDLGFSIGPRLNAAGRM
GQAELGIELLTTESEVRAEKLAKYIDELNLERQTLERSILRAADKQARERFDPSRDSALV
LADHDWHPGIIGIVAGRVADKFHMPAIVIALDKLGVKPGVGSARSVPGFNLHAALAECSE
LLESHGGHAAAAGLRVTEANLPAFRRKFCDVVARELGEGSRLAELFVDVETTFSCLTQRT
VEQIEKLAPFGHGNLRPVLCASEVRLTERPKRMGGAGRHLSMTFDQAGIKLRAVAFGGGD
WEDELAAINGEMSIAFRPVINRYRGRASVEIHLADWRLDSAQ
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaacattggcgccttgccccgcatgatccggcacgcatcgccgatttggagcga
gcggccggggtgccgtcgctggtcgcccacttgctgctttcccgcgggattcatgacccg
gcggacgtgcggcagtttctcgacccgaagctcaccgggctgcgcgatcctgaactgctc
cccggggccgcggcggcggccgatctgctctatcaggcctaccgggccaagcggcggatc
accgtttacggcgactacgacgccgacgggatgaccgcgacggcaattcttgtccgctgc
ttgcggatgctcgacgcgcaggtcgatttctacgtcccgcaccggatcgacgagggatac
ggggttaactccgaagcgatcgcgaagctggccgagcaaggggctgacgtcgtcgttacc
gtcgactgcggcatttgcagcgtcgcggaagcacgactggcgaaggaactcgggctcacg
ctgatcgtcaccgaccaccatcagatggacgccgagttgcccgatgcggcggcgttggtc
catccggcgctgccggggagcgagtacccgttcaaggggctctgcggagccgcggtggcg
ttcaagctggcgtgggccctctgccaacgcgtggcggagaacaaacgggtcaacgagcgg
atgcggcagttcttgctgcaggcggtcgggctggccgcgattgggaccgtggccgacgtc
gtaccgctcatcgacgagaatcgcatcctcgtgcgacatgggttgcaaagccttacggcg
taccccaccatcggcatgtcggccctcatgcggcagatcaagctgcacgagaagcatgcc
ctcgagtgcgaggatcttggcttttcgattggtccgcgattgaatgcggccgggcggatg
gggcaagcggagctgggcatcgaactcctcaccaccgagagcgaggtgcgggccgagaag
ctggccaagtacatcgacgagctgaatctcgaacgccaaacgctcgaacgaagtatcttg
cgggcggccgataagcaggcccgcgaacgcttcgaccccagccgcgattcggcgctcgtg
ctggccgaccatgattggcatccgggcattatcgggatcgtcgccggtcgcgtggccgat
aagttccatatgccggcgatcgtgatcgcgctcgataagcttggcgtcaagccgggcgtc
ggctcggcgcggagcgtgccggggttcaaccttcacgccgcgctggcggagtgcagcgaa
ctgctggagagccacggcgggcatgcggcggctgccggccttcgcgtcaccgaggcgaat
ctgccggccttccggcggaagttctgcgacgtggtggcccgtgagttgggcgaaggctct
cggctcgcggagctgttcgtcgatgtcgagacgacctttagctgtctcacccagcgaacc
gtcgagcagatcgagaagttggctccgttcggccacggcaacctgcggccggtgctgtgt
gctagcgaggtgcggctcacggagcgcccgaagcgaatgggcggcgcagggcggcacctg
tcgatgacgttcgatcaggcggggatcaagttgcgggccgtcgcgttcggcggcggcgac
tgggaagacgaactcgcagcgatcaacggcgagatgtcgatcgcgtttcgccccgtcatc
aaccgctaccgcggccgggcatcggtcgagattcatcttgccgattggcgtctcgatagc
gcgcaatag
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