Lactiplantibacillus plantarum JDM1: JDM1_0639
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Entry
JDM1_0639 CDS
T00946
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lpj
Lactiplantibacillus plantarum JDM1
Pathway
lpj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JDM1_0639 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lpj03400
]
JDM1_0639 (uvrB)
DNA repair and recombination proteins [BR:
lpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JDM1_0639 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JDM1_0639 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_5
AAA_7
AAA_30
AAA_19
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACT61527
LinkDB
All DBs
Position
670876..672879
Genome browser
AA seq
667 aa
AA seq
DB search
MIDRVDNNHFDLVSDYQPTGDQPQAIQQLTAGIESGEKEQILLGATGTGKTFTISNVIAK
VNKPTLILSHNKTLAGQLYGEFKKFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSAI
NDEIDKLRHSATSSLLERNDVIVVASVSSIFGLGDPHEYQDHVVSLRVGMEIDRNDLLRK
LVDIQFDRNDIDFQRGRFRVHGDVVEIFPASRDDHALRVEFFGDEIDRIREIDALTGEIV
ADREHVAIFPATHFMTNDAIMEHAIKGIEDELDGRLKELTADGKLLEAQRLKQRTTYDVE
MLKEMGYTSGIENYSRFMDGRKPGEPPYTLLDFFPKDFLLVVDESHVTMPQVRGMYNGDR
ARKQMLVDYGFRLPSALDNRPLKLEEVEQHINQVVYMSATPGPYEMDRTKHVVQQIIRPT
GLLDPTIEVRPIMGQIDDLVGEINKRIEVNERVFITTLTKKMAEDLTDYFKDLGIKVRYL
HSDIKTLERTQIIRDLRLGKFDVLVGINLLREGIDVPEVSLVAILDADKEGFLRNERSLI
QTIGRAARNEHGSVIMYADTTTDSMQAAMDETARRRAVQMKYNEDHHITPHTIKKAIPEL
IASTKTTEDAGKKDDFLETDFDDMTREQQLDMISKLEEQMKTAAKKLDFEQAATLRDTVM
ELKAQIS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatcgggtagataataatcattttgacttagtttcagattaccaaccaacgggc
gatcaaccccaagcgatccagcaattaaccgctggcattgaatcgggagaaaaagagcag
atattgttgggggcgaccgggaccgggaagacctttacaatttcgaacgtgattgcaaag
gtgaataagccaacgttaatcttgtcacataacaagacgttagcgggtcaattatacggg
gagtttaagaagtttttcccgaacaatgccgttgaatattttgtgagttattacgattat
tatcagccggaagcgtatgtgccttcgagtgatacctatatcgaaaaggactcggcaatc
aacgatgaaatcgataagttacggcactctgcgaccagctcattattggaacgcaacgat
gtgatcgtcgtggcatcggtctccagtattttcggtctaggggatcctcacgagtaccaa
gatcacgtagtctcactgcgagtcggcatggagatcgaccgcaatgatctgttgcgtaaa
cttgttgatattcaatttgatcgtaacgatattgatttccagcgggggcgttttcgggtc
catggtgatgtcgtagaaatctttccggcttcacgggatgaccacgcattgcgcgttgaa
ttctttggcgatgagattgatcgaattcgtgagattgacgccttaaccggtgaaattgta
gctgatcgtgaacatgttgcgattttcccagcgacccactttatgacgaatgatgcgatt
atggaacacgccatcaagggcattgaagatgagttggatggccgcctgaaagaattgacg
gccgatggcaaattgttagaggcgcaacgactcaagcagcggacgacctatgatgtcgaa
atgctcaaggaaatgggctacactagtggtatcgagaactattcacgttttatggatggc
cgtaaacctggcgaaccaccgtatacgttactggacttcttcccgaaggactttttgctc
gtggtcgatgagtcacacgtgacaatgccccaagttcggggaatgtataatggggaccga
gcacgtaaacaaatgctagtcgattatggcttccgtttgccaagtgcgttggacaaccgg
ccattgaaacttgaagaagttgaacagcatattaatcaagtggtttatatgtccgcaacg
ccgggcccttacgaaatggatcggaccaagcatgtcgtccagcaaattattcgaccaact
ggtttattggatcctacgattgaggttcgaccgattatgggtcagatcgatgacttagtg
ggtgaaatcaataagcgcattgaagtcaacgaacgggtctttatcaccacgttgactaag
aagatggcggaagatttgaccgactattttaaggatttaggcatcaaggtacggtacttg
cacagtgatattaagacgttggaacgaacgcagatcatccgcgacctgcgtctgggcaag
ttcgatgtgttggtcgggatcaacttgttgcgggaaggaattgacgttcccgaagtttca
ctagttgcgattttggatgcggataaggaaggtttccttcgtaacgagcgttcattgatc
caaacgattggtcgggcggctcgtaatgagcacggttcagtgattatgtatgctgacacc
acgactgattcgatgcaggccgcgatggatgagactgcacgtcgtcgtgccgtacagatg
aagtacaatgaagatcatcacatcacgccacatacgattaagaaggccattccagagcta
attgcttcgacgaagaccactgaagacgcgggcaagaaggatgacttcttagaaaccgac
tttgatgatatgacccgtgaacaacaattagatatgattagtaagttggaagaacagatg
aagaccgccgctaagaagctcgactttgaacaagccgcaacgctgcgtgatacggtcatg
gaattgaaagcacaaattagctag
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integrated database retrieval system
