Lactiplantibacillus plantarum ST-III: LPST_C0423
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Entry
LPST_C0423 CDS
T01324
Symbol
rhe1
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lps
Lactiplantibacillus plantarum ST-III
Pathway
lps03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lps00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPST_C0423 (rhe1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lps03019
]
LPST_C0423 (rhe1)
03009 Ribosome biogenesis [BR:
lps03009
]
LPST_C0423 (rhe1)
Enzymes [BR:
lps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPST_C0423 (rhe1)
Messenger RNA biogenesis [BR:
lps03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPST_C0423 (rhe1)
Ribosome biogenesis [BR:
lps03009
]
Prokaryotic type
rRNA helicases
LPST_C0423 (rhe1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADN97646
LinkDB
All DBs
Position
441699..443285
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AA seq
528 aa
AA seq
DB search
MKFTELGLSDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPIL
QRLDFDNHNIQALVVSPTRELAIQTQEEIFRLGKDERAKVQVVYGGADIRRQIRNLKQNP
QVIVGTPGRLLDHIRRGTVKLDHVKMLVLDEADEMLNMGFLEDIESIIKQVPDERQTMLF
SATMPPEIKRIGVQFMKEPHHVKIKSKEMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPE
LTIVFGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFKAGKLDILVATDVAA
RGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGVSLTFVTPNEMEYLRVIEKLTKK
RMLPLKPPTESEAFAGQLAAAEANVDSLVAKTSTEKYADQAAELLQKYDATDLVAALLND
LTKDDASAVPVKITPERPLPRHKGGGGNNRRGGYRGGNRNRNNSHGNGRGGYSHNGRNRD
RDRNGGRGDRKSNGYKGRSRDDNRSSNRNHDEGRKQSSKRSYTIRTND
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
ttgaagtttacagaactaggcttatccgatagcctacttaaagcagttaatcgggccgga
tacgaagaagcgaccccgattcaagccgaaaccattccaatggttctagaaggcaaagat
gtgattggtcaagcacaaaccggtactgggaagaccgccgcgtttgcattaccaatctta
caacgcttggattttgataaccataacattcaagcattagttgtttcaccaacgcgtgaa
ttagcaatccaaactcaggaagaaatcttccgcttaggtaaagacgaacgggcgaaagtc
caagtcgtttacggtggtgctgatattcggcgccaaatcagaaatctgaagcaaaaccca
caagtaatcgtcggaactcccggtcggttgcttgaccacattcgccggggcacggtcaag
ttagaccacgtcaagatgttagttcttgatgaagctgacgaaatgttaaacatgggtttc
ttggaagatattgaatcaattatcaaacaagtgccggatgaacgccaaactatgttgttc
tccgcaacgatgccacctgaaatcaaacgcattggtgtgcagttcatgaaggaaccgcat
cacgttaagatcaaatcaaaagaaatgactgctgatacggtcgatcaatattacgttaaa
gccaaagaatttgaaaagttcgatattatgacccggttgtttgatgttcaggcacctgaa
ctcacaatcgtgtttggtcgaacgaaacgtcgagttgacgaattatcaaagggtctcgaa
gcacgtggttataatgccgctgggattcatggtgatttgagccaacaacgtcggacgcaa
atcatgcgtcaattcaaggctggtaaattggatattctggttgcaaccgatgtggctgct
cggggacttgatgtttctggtgtgacccacgtttacaattatgatattccacaggatccg
gacagttatgttcaccggattggccgtactggccgtgccggacacaagggtgtttcatta
acttttgtaacaccaaacgaaatggaatatttgcgggtcatcgaaaagttgaccaagaag
cggatgttaccattgaagccaccaactgaatctgaagcttttgctggccaattagctgct
gcagaagccaatgttgattcgttagttgctaagacttcgactgaaaagtatgctgatcaa
gctgctgaattattacaaaaatacgatgctactgatctagttgctgccttgttaaatgac
ttaactaaggacgacgcctcagccgtacccgttaagattacgccagaacgcccattacct
cgtcacaaaggtggcggcggtaacaaccggcgtggcggatatcgtggcggtaatcgcaac
cgcaataacagtcatggcaatggtcgtggcggttattctcacaatggtcgcaatcgcgac
cgtgatcgtaacggtggccgtggcgatcggaagagcaatggttataaaggtcgcagtcgc
gatgataaccggagcagcaaccgcaaccatgatgaaggtcgcaagcaaagcagcaagcgg
agctatacgatccgcaccaatgattaa
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