Lacticaseibacillus rhamnosus LOCK900: LOCK900_0886
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Entry
LOCK900_0886 CDS
T02730
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
lro
Lacticaseibacillus rhamnosus LOCK900
Pathway
lro03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOCK900_0886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lro03400
]
LOCK900_0886
DNA repair and recombination proteins [BR:
lro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LOCK900_0886
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOCK900_0886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
DUF87
AAA_30
AAA_5
AAA_7
AAA_19
AAA_22
Kinesin
SLFN-g3_helicase
AAA_25
AAA
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AGP70702
LinkDB
All DBs
Position
860469..862484
Genome browser
AA seq
671 aa
AA seq
DB search
MIERIADRKFDLVSPYKPAGDQPQAIAKLTKGFEEGKKAQILLGATGTGKTFTMSNIIAN
LNKPTLILSHNKTLAGQLYGEFKEFFPHNAVEYFVSYYDYYQPEAYVPSTDTYIEKDSAI
NDEIDKLRHSATSALLERNDVIVVASVSSIFGLGDPHEYKNHVLSLRTGMTIDRNTLLRQ
LVDIQFDRNDIDFQRGRFRVRGDVVEIFPASRDDHAIRVEFFGDEIDRITEVDALTGEVI
GTRDHVAIFPATHFMTSDEQMERAIKSISAELEDRLKVLRGENKLLEAQRLEQRTNYDIE
MMREMGFTSGIENYSRHMDGRKPGEPPYTLLDFFPKDFTIMVDESHVTMPQVKGMYNGDR
ARKQMLINYGFRLPSALDNRPLKIDEFEKHVKRILYVSATPGPYELSRVPKEDIAEQIIR
PTGLLDPKIEVRPVMGQIDDLVGEINKRIDAHERVFITTLTKKMAEDLTDYLKDMGIKVR
YLHSDIKTLERTQIIRDLRLGKFDVLIGINLLREGIDVPEVSLIAILDADKEGFLRAERS
LIQTIGRASRNEHGKVIMYADKVTDSMKAAIDETRRRRAIQEKFNEEHHIQPKTIIKPIR
AAISTYEQSDDEKADAKKTFAEVDYEDMSKADKKELVANLRSQMQAAAKKLDFEQAASLR
DTILELQADMS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacgaattgctgatcgtaaatttgatttggtttcgccttataagccagccggg
gaccagcctcaggcaattgctaagctgactaaggggtttgaagaaggtaaaaaggcgcaa
attctgttaggtgcaaccgggaccgggaagacgtttacgatgagcaatatcatcgctaac
ttgaacaaaccgactttgattttatcgcataataaaacgttggctggtcagctgtatggt
gagtttaaggagtttttcccacataacgcggttgagtatttcgtgtcttattacgattat
taccagcctgaagcttatgtgcctagtacggacacttatattgaaaaagacagtgccatt
aatgatgagattgataaattgcggcatagcgctaccagtgcgttgcttgagcgtaatgac
gtgattgtcgttgcttcggtatcttctatctttggtttgggtgatccgcatgaatataag
aaccatgtgttatcgttgcggactgggatgaccattgaccgaaatacgttgttgcggcaa
ttagtagatattcagtttgatcgtaacgatattgattttcaacgcggtcgttttcgggta
cggggagatgtggtggaaattttcccagccagtcgtgatgatcacgccatccgcgttgaa
tttttcggtgatgaaattgatcggattaccgaagtcgatgctttgacgggtgaagtgatt
ggtacgcgagatcatgttgccattttcccggccactcatttcatgacgagcgatgaacag
atggaacgcgcaattaagagtatttctgcagaactcgaggatcgcttaaaagtgttgcgc
ggtgaaaacaagcttctagaagcccaacggttagagcagcgtactaattatgatattgaa
atgatgcgcgaaatgggcttcaccagtgggattgaaaattactcgcgccacatggatggt
cggaaacccggagaaccgccgtatacgttgctcgactttttcccgaaagactttacgatt
atggttgatgaaagtcatgtcacgatgccacaggttaaaggcatgtataatggcgatcgg
gcccggaaacagatgttgattaattacgggttccgcctgccaagtgccttggataatcga
cctttgaagattgatgagtttgaaaaacatgtcaaacggattctttatgtgagtgcaacg
ccaggaccttatgaactgagtcgtgttcctaaagaagatattgctgaacagattattcga
ccgaccgggttattggatcctaaaatcgaagtgcgtccggtgatgggccagattgatgat
ctggttggcgagatcaacaagcggattgatgcgcatgaacgagtcttcatcacaacgtta
actaagaaaatggcggaagatttaaccgactatcttaaggatatgggaattaaagtccgt
tatttgcatagtgacattaagacgcttgaacgaacccagattattcgtgatttgcggcta
ggtaagtttgatgtgttgatcgggattaaccttctgcgtgaaggtattgatgtaccggaa
gtatcattgattgcgattctggatgccgataaggaaggcttcttgcgggcagagcgttcg
ctgattcagacgattggccgggcatcgcgtaatgaacatggtaaagtcattatgtacgct
gacaaggtcacggattcgatgaaagccgcaattgatgaaactcggcggcggcgggcaatt
caagagaagtttaacgaagagcatcacatccaacccaagacgatcatcaaaccaattcgg
gcggctatttcaacctatgagcaatcggatgacgaaaaagccgatgccaagaagactttt
gctgaagtcgattacgaagatatgagtaaagcggataagaaagaactggttgccaacctt
cgctcacagatgcaggcggcggccaaaaagttggactttgagcaggcagcttctttgcgc
gatacgattttggaattgcaagcggatatgtcttga
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integrated database retrieval system
