Labeo rohita (rohu): 127174826
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Entry
127174826 CDS
T09007
Name
(RefSeq) collagen alpha-1(XIII) chain-like isoform X1
KO
K16617
collagen type XIII alpha
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lroh00536
]
127174826
Glycosaminoglycan binding proteins [BR:
lroh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
127174826
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
127174826
NCBI-ProteinID:
XP_050981389
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Position
13:complement(8586949..8650106)
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AA seq
655 aa
AA seq
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MNFIVAWQGVVFFSISIVDWFFLYSLPTFLSPLFQGPPGRAGFPGDKGSMGIPGRMGLKG
NLGEKGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGPKGDMGPRGPKGI
PGEPGPKGEKGVCGDYTHRMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGPPG
TPGLTGASGPPGKPGEPGKPGKDPRMLPGLKGEPGVPGQKGDRGEAGPSGPEGPQGIKGD
EGIKGEPGMDGQRGEKGEKGELGMPGMPGKQGVKGEPGFPGAPGRKGQAGVSGIPGKRGY
KGEKGEPSAAGTGVKGEPGVPGLPGQAGLKGEKGDQGIKGDPGQEGPSGPRGPPGPTGEP
GKSLINNNENDIRNVHLMGPPGLPGPPGPPGLPGTPGLKGDVGLPGPPGLDGEKGPRGKP
GDHGPIGPPGPEGPRGEGGVIGLPGPKGDKGDMGPSGSAGLDGPTGEKGVSGPPGHIGLP
GPMGQKGEPGEKGDKADLVYGPAGPPGPAGPVGPMGPPGLSGPKGEPGIGLRGEKGSPGQ
KGEKGDRGHLGLPGAHGLDGRPGPVGLIGPAGVPGPAGPKGEMGEKGDMGVAGPIGPQGI
PGLVGPPGLKGNRGERGKKGNRGAKGDKGDQGAPGLDAPCPLGDDGLPVPGCWNK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaattttattgtggcttggcagggtgttgtgttcttctcaatcagtattgttgactgg
ttctttctttattccctacccacatttctctcgcccctttttcagggtccacctggacga
gcaggctttccgggagacaaaggatcaatgggcattcctggaagaatgggcttaaaggga
aacctgggggagaagggagcgccaggagagccaggtctgtctatcattggcccacgagga
cctcctggacaacccggtactagaggatttccaggctttccgggccccatcggcttggac
gggaaacccggacagaatgggcctaaaggtgatatgggtcctcgtggtcctaaaggaata
ccaggtgaacctggtccaaaaggagagaagggtgtatgtggtgactacactcacaggatg
ttgcccatcaccgtccgcaacatgccctcaataagccctctaatcctaaagcgcctcaag
cagggcgagcccggagcgcaaggaccaccgggacctcctggccccccagggcctccaggg
actcctggcctaactggtgcaagtgggcccccgggtaaacctggagaacctggaaaacct
ggaaaagacccaaggatgctaccggggctgaagggtgaacccggtgtacctggacaaaag
ggtgatcgtggtgaagccggtccaagtggacctgaaggcccccagggaattaaaggagat
gaaggaataaagggtgaaccagggatggatgggcaaagaggagagaagggggagaagggt
gagctagggatgcctggaatgcctgggaaacaaggagtgaagggagagcctggatttcca
ggcgcccctggacgaaagggtcaggcaggtgtttctggtatccctggaaaacggggctac
aagggagaaaaaggcgagcctagtgctgcaggaactggcgttaaaggagaaccaggcgtc
ccagggctgccaggacaagcaggactcaagggtgagaaaggtgatcaaggcataaagggt
gaccctggtcaggaaggcccatctggaccaaggggtccgccaggtccaaccggggagcca
ggaaaatctttaatcaacaacaatgagaatgatattcgcaacgtgcatttaatgggccct
cctggtctgcctggacctcctgggcctccagggcttccaggcacccctgggttgaagggt
gatgttggacttccaggtccccctggtcttgatggggaaaagggtccaagaggaaagcca
ggagaccatggacccatcggccctcctggaccagagggaccacggggagaaggaggagtc
ataggcttgcctgggccaaaaggagacaaaggagacatgggcccctcaggatcagctggt
ttagatggccctactggagaaaagggggtttcagggccccctggccacattggattgcca
ggcccaatgggtcagaaaggtgaacctggggagaaaggagataaagcagatctggtctat
ggacctgctggacctccaggacctgcagggccagttgggccaatgggacctccaggtttg
tcaggaccaaagggagagccaggaataggcctcagaggagaaaagggatcacctggacag
aaaggagagaaaggagacaggggccatcttggactccctggggctcatggtttagacggc
agacctggtccagtgggtctgataggaccagctggagtgcctgggcctgcaggaccaaaa
ggagaaatgggggagaagggtgatatgggagtagctggaccaattgggcctcaaggcatc
cctggtttagtaggaccaccgggattaaaaggaaaccggggggagaggggcaagaaaggc
aacaggggggccaaaggggataagggagaccaaggagccccgggattagatgccccgtgt
ccgttgggtgacgatggtttgccagtaccagggtgttggaataaatga
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