Labeo rohita (rohu): 127178403
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Entry
127178403 CDS
T09007
Symbol
cdkal1
Name
(RefSeq) threonylcarbamoyladenosine tRNA methylthiotransferase
KO
K15865
threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1 [EC:
2.8.4.5
]
Organism
lroh
Labeo rohita (rohu)
Brite
KEGG Orthology (KO) [BR:
lroh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lroh03016
]
127178403 (cdkal1)
Enzymes [BR:
lroh01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.5 tRNA (N6-L-threonylcarbamoyladenosine37-C2)-methylthiotransferase
127178403 (cdkal1)
Transfer RNA biogenesis [BR:
lroh03016
]
Eukaryotic type
tRNA modification factors
Methylthiotransferase
127178403 (cdkal1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
TraT
Motif
Other DBs
NCBI-GeneID:
127178403
NCBI-ProteinID:
XP_050987218
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All DBs
Position
16:complement(39117230..39357031)
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AA seq
564 aa
AA seq
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MPSACDSLVDDIEDMVTSHDPTPHERQFSRRNIVPRPRKHKLQPAGEELQTDSVIPGTQK
VWVRTWGCSHNSSDGEYMAGQLAASGYKITENPSDADLWLLNSCTVKNPAEDHFRNSIKK
AQEQNKKVVVAGCVPQAQPRMDYLKELSIIGVQQIDRVVEVVDEAIKGHSVRLLGQKKEK
GKRLGGARLDLPKIRKNPLIEIISINTGCLNACTYCKTKHARGDLASYPIEELVERARQS
FQEGVCEIWLTSEDTGAYGRDIGTDLPSLLWELVKEIPEGAMLRLGMTNPPYILEHLEEM
AKILNHPRVYAFLHVPVQSASDSVLMDMKREYCCADFRRVVDFLKEKVPGITIATDIICG
FPGETDEDFEQTMELVRQYRFPSLFINQFYPRPGTPAAKMEQIPAHMKKQRTKELSALFH
SYNPYDHKIGERQHVLVTEESFDAQYFVAHNKFYEQVLVPKKPEFKGKMIEVDIYEAGKH
YVKGRPVEDAQVFTPSIAQPLQKGQVSGLPQELKASHQNGVCASVASSALAGRSWRFDGD
GLKLLTLGLALAAVIVALVIDKLH
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atgccatccgcttgtgactctctggttgacgatatagaggatatggtgacgtcccatgac
cccactcctcacgagcgccaattctccaggaggaacattgtgcctcgtccacgcaaacac
aaactccagcctgcaggagaagagcttcagacagacagcgtgattcctggcacacagaag
gtctgggtgaggacgtggggctgctctcacaacagctctgatggcgaatacatggccgga
cagctggctgccagcggctataagatcacagagaatccgtcggacgctgatctttggttg
ctgaacagctgcacagtcaaaaaccctgcagaagatcatttcaggaactccatcaagaag
gcgcaggagcagaataagaaggtggttgtggcgggatgcgtgccgcaggcccagcccagg
atggactacctgaaagagctgagcatcatcggggtccagcagatcgatcgagtggtggag
gttgtggacgaggctatcaaaggtcactctgtgcgtctgctgggtcagaagaaggagaaa
ggcaagcgtctgggaggagcgcggctggatctgcccaagatcaggaagaacccactgatt
gaaatcatttccatcaatacaggctgtctgaacgcttgcacgtactgcaaaaccaaacac
gccagaggagatctggccagttaccccatcgaggagctggtggagagagcacgacagtcc
ttccaggagggtgtctgtgagatctggctgaccagcgaggacacgggtgcgtacggcagg
gacatcggcacggacctgccgtctctgctctgggagctggtgaaggagatcccggaggga
gcgatgctgcgtctgggcatgaccaacccaccgtacatcctggaacatctggaggaaatg
gccaaaatcctgaaccatccgcgggtctacgccttcctccacgtgccggtccagtccgcg
tccgacagcgtgctgatggacatgaagagagagtactgctgcgccgacttcagacgcgtc
gtggattttctcaaggagaaggttccaggcatcactatcgccacggacatcatctgcggt
ttcccaggtgagacggacgaggattttgagcagacgatggagctcgtgagacagtaccgc
tttcccagcctcttcatcaaccagttctacccacgacctggaactccagcggccaagatg
gagcagattccagcacacatgaagaaacaaagaaccaaagagctttctgccctcttccac
tcatacaacccttacgaccacaagatcggcgagaggcagcacgtcctggtcactgaggag
tcgttcgatgcgcagtacttcgtcgcacacaacaagttctacgaacaggttctggtgccc
aagaagccggagttcaaagggaagatgatcgaggtggacatatatgaggctgggaagcac
tacgtgaagggtcggcccgtggaggacgcgcaggtctttactccgtccatcgctcagcct
cttcagaagggacaggtgtctggactccctcaggagctgaaggcgtcccatcagaacggc
gtctgtgcctcggtggcttcctctgcgctcgcgggacggtcgtggaggttcgatggcgat
ggactcaagctgctgacgttgggactcgctctggctgctgtgatcgtggctcttgtgatt
gacaagctccactga
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