Leifsonia shinshuensis: F1C12_15665
Help
Entry
F1C12_15665 CDS
T06806
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lse
Leifsonia shinshuensis
Pathway
lse03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lse00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F1C12_15665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lse03019
]
F1C12_15665
03009 Ribosome biogenesis [BR:
lse03009
]
F1C12_15665
Enzymes [BR:
lse01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F1C12_15665
Messenger RNA biogenesis [BR:
lse03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F1C12_15665
Ribosome biogenesis [BR:
lse03009
]
Prokaryotic type
rRNA helicases
F1C12_15665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
HEM4
Motif
Other DBs
NCBI-ProteinID:
QNE36408
UniProt:
A0A7G6YD43
LinkDB
All DBs
Position
complement(3222311..3224230)
Genome browser
AA seq
639 aa
AA seq
DB search
MSTPENDTAETPDTTAETPETGAENAAADTEASLTFSDLGLDAHVLKAVKDLGYETPSAI
QAATIPLLLEGRDVVGLAQTGTGKTAAFALPILSRLDLSQKIPQALVLAPTRELALQVAE
AFESYAAHMRGVHLLPVYGGQGYGVQLSALRRGVHIVVGTPGRIMDHLDKGTLDLSELRY
LVLDEADEMLKMGFAEDVETILADTPDDKQVALFSATMPAQIRRISKKYLHDPEEVTVKT
KTTTSPNITQRYLVVSYPQKVDALTRILEVENFEGMIIFVRTKNETETLAERLRARGYSA
AAINGDVAQAQRERTVDQLKSGKLDILVATDVAARGLDVERISHVVNFDIPVDTESYVHR
IGRTGRAGRSGAAISFVTPRERRLLTAIEKATRQPLTQMQLPSVDDINVTRLARFDDAIS
TALAQVERITRFRDIIGHYVEHHDVPEADVAAALAVVAQGDEPLLLDADDALARSVERDG
RSGGRDDRAGGRDGRDDRGGRGARRERSDKPMAAYRIEVGKRQKVEPRQIVGALANEGGL
SREDFGHIRIMPDFSLVELPADLPAGTLSRLEGTRISGKLIEIRPDRGAGARRERGAWEE
RRGRDERPRRDDRRGRDDRPSRDDRPARDERPPRKPRHR
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgcccgagaacgacaccgccgagacgcccgacacgaccgccgagacgcccgag
accggcgcggagaacgccgccgccgacaccgaggcctccctcaccttctccgacctgggc
ctcgacgcccacgtcctgaaggccgtgaaggacctcggctacgagaccccgtcggccatc
caggcggcgaccatcccgctgctgctggagggccgggacgtcgtcgggctcgcccagacc
ggaacgggcaagacggcggcgttcgcgctgccgatcctgtcgcggctcgacctgtcgcag
aagatcccgcaggcgctcgtcctcgcgcccacccgcgagctcgccctccaggtcgcggag
gccttcgagagctacgccgcccacatgcgcggcgtgcacctgctgccggtgtatggcggg
cagggctacggcgtgcagctgtcggcgctgcgccgcggcgtccacatcgtcgtcggcacc
cccggccggatcatggaccacctcgacaagggcacgctcgacctctccgagctccgttac
ctcgtgctcgacgaggccgacgagatgctgaagatgggcttcgcggaggacgtcgagacc
atcctcgccgacaccccggacgacaagcaggtcgcgctgttctcggcgacgatgcccgcg
cagatccgccgcatctcgaagaagtacctgcacgacccggaagaggtcacggtcaagacc
aagaccacgacctcccccaacatcacccagcgctacctggtcgtctcgtatccgcagaag
gtggacgcgctcacccgcatcctcgaggtggagaacttcgaggggatgatcatcttcgtc
cgcaccaagaacgagaccgagacactggccgagcggctgcgcgcccgcggctactcggcg
gcggcgatcaacggggatgtcgcccaggcgcagcgcgagcgcacggtcgaccagctcaag
tcgggcaagctcgacatcctggtcgccaccgacgtcgcggcacgcggcctcgacgtcgag
cggatcagccatgtggtcaacttcgacatcccggtcgacaccgagtcgtacgtgcaccgc
atcggccggaccggccgcgccggacgcagcggcgcggcgatcagcttcgtcaccccgcgc
gagcggcgcctgctgaccgccatcgagaaggccacccgccagccgctgacgcagatgcag
ctgccgagcgtggacgacatcaacgtcacccgcctggcccgcttcgacgacgcgatcagc
acggcactggcgcaggtcgagcggatcacgcgcttccgcgacatcatcgggcactatgtg
gagcaccacgacgtgccggaggccgacgtggcggctgcgctcgcggtcgtggcgcagggc
gacgagccgctgctgctggacgcggacgatgcgctcgcgcggagcgtcgagcgggacggg
cgctcgggcgggcgggacgaccgcgccggcggacgtgacgggcgtgacgaccgcggcggc
cgtggcgcgcggcgcgagcgcagcgacaagccgatggccgcgtaccggatcgaggtcggc
aagcgccagaaggtggagccccgccagatcgtcggcgccctcgccaacgagggcggcctg
agtcgcgaggacttcggccacatccgcatcatgccggacttctccctcgtggagcttccg
gcggacctcccggctggcacgctgtcccggctggaggggacgcggatcagcggcaagctg
atcgagatccggccggaccgcggcgcgggggcgcggcgtgagcgtggtgcgtgggaggaa
cggcgcgggcgcgacgagcggccgcggagggatgaccggcggggccgggacgaccggccg
agccgagacgaccggccggcgcgcgacgagcgacctcctcgcaagccgcggcaccgctga
DBGET
integrated database retrieval system
