Ligilactobacillus salivarius CECT 5713: HN6_00716
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Entry
HN6_00716 CDS
T01962
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
lsi
Ligilactobacillus salivarius CECT 5713
Pathway
lsi03030
DNA replication
lsi03430
Mismatch repair
lsi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HN6_00716 (dnaE)
03430 Mismatch repair
HN6_00716 (dnaE)
03440 Homologous recombination
HN6_00716 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsi03032
]
HN6_00716 (dnaE)
03400 DNA repair and recombination proteins [BR:
lsi03400
]
HN6_00716 (dnaE)
Enzymes [BR:
lsi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HN6_00716 (dnaE)
DNA replication proteins [BR:
lsi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HN6_00716 (dnaE)
DNA repair and recombination proteins [BR:
lsi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HN6_00716 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
tRNA_anti-codon
DUF1836
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ADJ78993
LinkDB
All DBs
Position
885869..889162
Genome browser
AA seq
1097 aa
AA seq
DB search
MYAPLQVLSSYSLLQSPLRIPEYVKLGKELGYNALVLTDINSMYGVLDFYHECVKAGIKP
IIGITLQSGDDEYIFIAKNSNGYQNLMNISSKRLTAVDENYKNIFKLADITEYLQDVIVI
LKPSYLTVNDIISDQVTELQTLVSAAETTYYGVNPNDRDAINNDLMAAEKLQLETILLTP
VKYLKERDYFSTKVLQAIGTGENVNPNWNFKNDGNYLHTPEEYERLGTDYLSSAYQNAIN
VIAQCNLTLNFPKTQLPHFKETNGLSSEGFLRKLCQEGLAKRIAEENIKNQEEYQNRLDY
ELSVIHRMGFDDYFLIVWDVTNFAHENNILTGPGRGSAAGSLVSYTLYITDIDPIKYDLI
FERFLNEERAQMPDIDLDIPDIKRDTIIEYLHQKYGQQHMAQIITFGTLKTKQVLRDVAR
VFDLKTYEADAWSKAIPKEYGITLKEAYASSQSLKNLVADNSKNRLLFETAIALEGLPRH
YSTHAAGIILSDDDLIDHVPVQIGGDGILMSQFAKNQVEEVGLLKMDFLGLRNLSILENT
ITLIKKGYHVDFDIRKINLDDPETLKIYQNAETSGVFQFESAGIRGVLTKLKPTSFEDVA
AVNALYRPGPIQNIDEFIARKHGERPITYPSKELEGILKQTYGIMVYQEQVMQVASTMGG
FTLGQADSLRRAMSKKKHDIISRMEVMFINGAMKKGYTHEVAKKVYAYIMEFGDYGFNRS
HAVAYSKMSFELAYIKAHYPAAFFAALLNSVIGNPRKTKDYVLEAKNKGVRVHHPDINIS
QSLYILRNGEIYFGLSCIKSLRKNFLQDILQERKRNGIFKNMEDFLQRIDKRYLKRELIE
ILIYSGVFDTFGQSRRELFAMLPRLLSNIELSGNNVELFSMLAPKKTTVEKIEISNDELL
EKENYYLGAYLSGHPVEKYTELIYLTNSTRVSQINESNKDKYVSMILQIKVIKIIRTKNG
SQMAFVTAADQTGNMDLTFFPNAYKRFSSVLEDGNIILIEGRVDTTRGLAITISKAMLAN
DVKIKTYYLRLSKAFDTSKRRNLEKLMLQNSGNVPVIIVDEKSGKKKLLNKKLWLSQDKI
VYNRLVELLGVENVVLK
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgtatgctcccttacaagttttaagttcatatagtttgttgcaaagtccattgagaatt
ccagagtatgtaaaattaggaaaagaattgggatacaatgctctagtattgacagatata
aattcaatgtatggcgttttggacttctatcatgaatgtgttaaagcaggaattaagcca
attattggtattacattacaatctggtgatgatgagtatatttttatcgctaagaacagt
aatggttatcaaaatttgatgaatatttcttcaaagagactaactgcagtggatgagaat
tataaaaatatttttaaattagcagatattacagagtatttacaagatgtaattgttata
ttgaagccatcgtatctaacggtaaatgacataataagtgatcaggtgacggaattacaa
acattagtgtcagctgccgagacaacttattatggtgttaaccctaatgatagagatgct
ataaataatgatttaatggctgctgaaaagttacaattagagacaattttattaacacca
gttaaatacttaaaagaacgtgattactttagtactaaggtattacaagccataggaact
ggtgaaaatgttaatccgaattggaattttaaaaatgatggaaattatctacatacacct
gaggaatatgagcgcttaggtacagattatttaagtagtgcatatcaaaatgcaattaat
gtgattgctcaatgtaacttaacattaaactttcctaaaacacagttaccccattttaaa
gaaactaatggcttaagttcagaaggtttcttaagaaaattgtgtcaagaaggattggct
aaaagaatagcggaagaaaatataaagaaccaagaagaatatcaaaatagattagattat
gaattatcagtcattcatcgcatgggatttgatgattacttcttaattgtttgggacgtg
acaaattttgcccatgaaaataatattttaaccggtccaggtagaggatcagcagctggt
tctttagtttcatataccttatatattactgatattgatcctattaagtatgacttgatt
tttgaacgttttttgaatgaagaacgtgctcaaatgccagatattgacttggatattcct
gacataaaaagagatactatcattgaatacttacatcagaaatatgggcagcaacatatg
gcacagattataacatttggaacattaaaaacaaaacaggtattgcgcgatgttgctagg
gtatttgatttaaaaacttatgaagcagatgcgtggagtaaggcgatacctaaagaatat
ggaattactttaaaagaagcgtatgctagtagccaatctttgaagaacttagttgcagat
aactctaagaatcgactattattcgaaactgccattgcacttgaaggactaccacgacat
tattctacacatgcagctgggattatcttaagtgatgatgatttaatagatcacgtaccg
gttcagattggtggcgatggtattttaatgagtcaatttgctaaaaatcaagttgaagaa
gttggattgttaaaaatggattttctaggattgagaaatttatcaattttggaaaataca
attacgctaataaaaaagggttatcatgtcgattttgatataagaaaaattaatttggac
gatcctgaaactttaaagatctatcaaaatgcagaaacaagtggtgtttttcaatttgaa
tcagctggtatcagaggagtattaacgaaattaaagcctacttcatttgaagatgtagca
gcggtaaatgccttatatcgtccaggacctattcaaaatattgacgaatttattgcaaga
aagcatggtgaaagaccaataacttatccttcaaaagaactggaaggtattttgaagcaa
acttatggaattatggtttaccaagaacaagttatgcaagttgcctctactatgggagga
tttactttaggacaagctgattcgcttagaagagcgatgagtaaaaagaaacatgatata
atctcgcgaatggaagttatgtttattaatggcgcgatgaaaaaaggatacacacatgag
gttgctaaaaaagtgtatgcttatatcatggaatttggagattatggttttaaccggtca
catgcagttgcttattcaaaaatgtcatttgaattagcatatataaaagcacattaccca
gcagctttctttgcagctttattaaattcagtaattggaaatcctcgtaaaactaaagat
tatgttttggaagctaagaataagggagtaagagtgcatcacccagacataaatattagc
caatctctatatatcttacgtaatggagaaatctactttgggttaagttgtattaagtca
ttgagaaagaactttcttcaagacattttgcaagaaagaaaacgaaatggtattttcaaa
aatatggaggatttcttgcaaagaatcgataaaagatacttaaaaagagaattaatagag
attttaatttactcgggtgtttttgatacatttggtcaatctagaagagaattgtttgca
atgttaccacgcttactaagcaatattgaacttagtggaaataatgttgaactattttca
atgttagcacccaagaaaacgactgtagaaaagatagagatttcaaatgatgaactctta
gaaaaagagaattattatctaggggcttatttatcaggccatccagtcgaaaaatataca
gagttaatctatttaaccaattcaactagagtttctcaaataaatgagtctaataaagat
aagtatgtttcaatgattttgcagataaaagttataaaaatcattagaactaaaaatggt
tctcaaatggcgtttgtaactgcagcagatcaaactggaaacatggatttaacgtttttc
cctaatgcatataagagattttcatcagttttggaagatggaaatataatcttgattgaa
ggtagagttgatacaacaagaggattggccataacaattagtaaagcgatgttagcaaac
gatgtaaaaataaaaacttattatctacgcttatcaaaagccttcgatacaagtaaaaga
agaaatcttgaaaagttaatgctccaaaatagtggtaatgtacctgttattatagttgat
gaaaaatcagggaaaaagaaacttcttaataaaaaattatggctatcacaggataaaata
gtttacaatagacttgtagagttgttaggagttgaaaatgtagttttgaaataa
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integrated database retrieval system
