Lonchura striata domestica (Bengalese finch): 110469889
Help
Entry
110469889 CDS
T05897
Symbol
COL13A1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110469889 (COL13A1)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110469889 (COL13A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110469889
NCBI-ProteinID:
XP_021384757
LinkDB
All DBs
Position
6:complement(2271637..2365038)
Genome browser
AA seq
760 aa
AA seq
DB search
MLEEKSWKGVDEAAFDRGCVAPPRSGDGERCCRLPLLLGSGLPGVSLLSLVLSLLLYFRT
SDLQSRVSHLEADRPTQLPAWLSADQMETAILGRVDQLLNEKLKFHLPRHREVRDTYQRC
NCPAGPPGDKGAMGIPGRPGLKGQSGEKGAPGEAGMSVIGPRGPPGQPGTRGFPGFPGPI
GLDGKPGHPGQKGEMGVAGPRGQPGPPGQKGEKGQCAEYPHRLLPLLNSVRLAPPPVIKR
RTFQGEQGQAGIQGPPGPPGPPGPAGPEGIPGRPGPIGPPGRAGEPGKPGRDGKGLPGPP
GPKGDAGIQGYPGRKGEVGESGLPGAHGLPGASGPKGEKGDDGIKGERGMPGLPGRHGSK
GAPGTAAAGMKGEPGTPGEKGEKGRAGDPGIPGLPGPKGEKGIAENALVGAKGEPGPPGL
PGPPGPKGEAGDVGQPGAAGSPGEKGERGSPGDQGPMGPRGPKGEPGKDEMMDYDGNISE
ALQEIRTLALMGPPGRPGVAGPPGPPGQKGEIGLPGPPGHDGEKGPRGKPGEMGPPGLQG
LPGKDGPPGIKGEPGHVGVRGEKGDKGEAGQAGSPGLDGPTGEKGEQGDQGIPGPSGLPG
PIGLPGLTITGPPGPQGPPGPPGLQGVPGPKGEAGIDGVKGEKGAQGEKGDRGPLGLPGA
SGLDGRPGPPGIPGPIGVSGPAGPKGERGSKGDPGVAGPMGPAGLPGLQGLPGDKGVRGE
RGKKGSRGSKGDKGDQGAPGLDAPCPLGEDGLPVQGCWNK
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgttggaggagaagagctggaaaggagtcgacgaagcagcttttgacagggggtgtgtg
gctccccccaggagtggcgatggggagagatgctgccgcctccctctcctgctgggctcg
gggctgcctggcgtgtccctgctctctctggtgctgagcctcctgctgtactttcggacc
tccgatctgcagtcccgggtgtcccacttggaagcagacagacccacgcagctccctgcc
tggctctcagcagaccaaatggagacagctattttgggaagagttgaccaactgctcaat
gagaaattaaagttccacttgccaagacatcgagaagttcgagacacataccagcgatgc
aactgcccggcaggtccacctggggacaaaggtgcgatgggaatccctgggcggccggga
ctaaaagggcaatctggagagaagggtgctccaggagaagctggcatgtccgtcatcggg
ccccgcggtccacccggacagcctggaacaagaggttttcctggattcccgggccctatt
ggcttggacggcaaaccggggcatcctggacagaagggagagatgggtgttgcaggtccc
aggggacaacctggacccccaggacaaaaaggagagaagggtcagtgtgcagagtacccg
cacaggctgctgcctctcctcaattcagtgcggctggctccacctccggtcataaagaga
cgcactttccagggtgaacaaggacaggcggggatccaaggtcccccggggccccctggt
ccaccagggcccgctggacctgaaggaatcccaggacgtcctggaccaattggaccccct
ggcagagcaggagaacctggaaagcctggcagagatgggaagggcttacctgggcctcct
ggaccaaagggagacgctgggattcagggataccctggcagaaagggtgaggtgggcgag
tcaggcctgcccggtgcccatggcctccctggagcctctggccccaagggtgaaaaaggg
gatgatggcataaagggggagagaggcatgccagggctgccaggaagacatggctctaag
ggcgctcccgggacggccgccgcagggatgaagggcgagcctgggactccaggagaaaag
ggtgaaaagggacgagctggtgatcctgggattcctgggcttcctggcccaaagggagag
aagggaattgctgagaatgccttggtgggagctaaaggagaacctggccctccaggtctg
cctggaccccctggaccaaagggagaagctggtgacgttggtcagcctggtgctgcagga
tcaccgggagaaaagggggaacgtggttcaccaggagaccagggacccatgggcccaagg
ggccccaaaggagagcctgggaaggatgaaatgatggactatgatgggaatatcagtgag
gctctccaggagatacgaactttggccttgatgggacctccaggacgtccaggtgtggct
ggacctccaggaccaccaggacagaagggtgaaattggcttgccaggtcctccaggccac
gatggagaaaagggaccacgtggcaagcctggagaaatgggccctcctgggcttcaggga
ctgccaggaaaggatggacctcctgggataaagggagagccaggccacgtcggggtcaga
ggagaaaagggcgataagggagaggcaggacaagcaggctcaccgggtctagatggcccc
actggagagaaaggagagcaaggtgaccaagggataccaggaccatcaggattgccaggg
cccattggacttccaggactgacaataactgggccccctggacctcaaggccctccagga
cctccaggtcttcagggtgtcccaggacccaagggggaagcagggattgatggagtgaaa
ggagagaagggtgcccagggtgaaaaaggagacagagggccactgggattacccggtgct
tcaggtttagacggcaggcctggaccaccgggtattccaggaccaattggggtttcagga
ccagcaggaccaaaaggagaaaggggcagtaaaggagatcctggagttgcaggaccaatg
gggccagcagggcttcctggtttacaaggtctgcctggtgacaagggagtccggggggag
aggggcaagaaaggctctagagggtctaaaggggataagggagaccaaggagcacctgga
ttagatgcaccctgtccgttgggagaagatggccttccagttcaaggctgctggaataag
tga
DBGET
integrated database retrieval system
