Lonchura striata domestica (Bengalese finch): 110473580
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Entry
110473580 CDS
T05897
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110473580
NCBI-ProteinID:
XP_021391902
LinkDB
All DBs
Position
6:complement(23906892..23941061)
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AA seq
1508 aa
AA seq
DB search
MDSVTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHG
SSYVTSSGSGRLHSTSSSSSYRQAQSPSSTLTKSPGSTFERKTYVNRHATYEGSSSANSS
PEFPRKDFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRS
PSGTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSLGGYHNSS
SLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSSSSTVFGVQNNLSPSSSSATQNATAASA
AYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDILRKDCKFLLVEKEKAPAKEMELLVMT
KDTGKVFSGSNTGLNGGSFVEDTLKKEKQGFSSSYATDTGLKSDANGGLKSMPKRDKETY
AEIRSGDAGGAIGSAPSWCPCGSCCSWWKWLLGLLLAWLFLLGLLFGLIALAEEVRKLKS
RVEDLEKINGGLLAINQGNSKIEKDVSRVDFLHGNSPSLTFPYENEESVWLMVKSRLNKE
IERGYFRGEKGERGEKGDMGIQGPKGDQGLPGAPGIPGPIGHAGPEGPKGQKGSMGEPGM
EGPMGQRGREGMPGPRGEPGPPGFGEKGDRGAVGEPGPPGPPGPPGSTGLKGLMGSPGPQ
GPPGPPGLQGFRGEAGLPGAKGEKGASGPPGPKGDQGEKGARGMTGEQGSRGIPGPPGEP
GPKGPVGQAGRDGQPGEKGEPGLMGMPGARGPPGPTGDAGEPGLTGPQGPPGLPGNPGRP
GAKGEPGAPGKVVNAEGSSTITLPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGPRGEK
GSPGEAVIETIRTEVSSLASQMLGDLHGRAGPPGPPGPPGESVQGPPGPRGPPGLPGPPG
PPGRPGSSMSTSEAFFTGPPGPPGPPGPKGDQGERGPRGFTGEPGDPGLSAFSSHGERVT
IQGPPGPPGPPGPKGDAGVPGAPGIPGASRGGSRQIQGPPGPPGPPGPPGPSGGSSQEIQ
QYVTDYLKSDNVRHYFTGAQGPPGPPGPPGLITTADGMTLDYAELATRVMSYMTSSSGRY
ESLSSSVSTTSILYQELLDLLQREEIRQYLIGPQGPPGPPGPGRDGMSLSLDYDELTRRF
ISYLSSSGMSIGLPGPPGPPGSPGISYSDLTAYLRNSEFSGIVGPPGPTGPPGPPGIPGS
PGTSLEDISAYLQNVGYSSLSGVRGPPGPPGPPGPPGFSGTGLLSYADITNNDEFRSELI
QYLKSDEVRSYISGPPGPPGPPGPKGDSGFVSGSMSSSYQGLRASEHLHGGSLGAEGSHG
GSLGTGSSYGSSMSSRSSYHASMGSDGAYDASMGTDRSFDGLLTEEETLRSAGSSRSYSN
SFTGSLDYNELALRVSESLQSRGILQDLMSYTAQGPAGPPGPPGPPGISKIFAAYGNVTA
DLMDFFRTHGAIQGPPGEKGERGYPGPKGDPGPMGPPGRHGQRGPKGEKGEKGEQLYVGR
RKRRTVGV
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggattctgttacaaagaaaacgaggcaggatggatcagaagttactgaaagacttatt
acagagactgtaaccacaagactgacatccttgccacccaaaggagggagcagcagtggg
ctcaaaacatcatcccacaccggagggagtggagtggaaaagcggtcgtacacccatgga
agcagctatgtgacctcaagtggaagtggtagattgcattcaacatcatcatcctccagc
tacagacaagcacagtctcccagctctactctcaccaaatcacctggctcaacatttgaa
agaaaaacctatgtcaaccgccatgcaacatatgaagggagctccagtgccaactcttct
cctgaatttcccagaaaagattttgcatctgcctctacgagagggagaagccaaagtcga
gagagtgaaatacgtgtccgactgcagagcgcatctccctctggcagatggacggagttg
gatgatgtgaaacgtttgctgaaaggaagtcgatctgccagctgcagccctactcggtca
ccatccggtacactcccgataccgaaaaaggctgtggtggagacaaagatggtcactgag
agctctcagtcagtgtcagggacatatgacacaaccatactgaatactgccctcccttca
tacatgtggtcctccactttgcctgctgggtcttcccttggtggataccataacagctct
tccttgatcaatgccatgtctcactctacaggatcagtttttggtgttccaaataacctg
gctcccagcaatcatactctgaatgcgggcctcagctcttcctctacagtatttggagtt
caaaacaacctgtccccaagctcttcttctgcaacccagaatgctacagcagcttctgca
gcatatgggatgaagaacacttctcagagcaacaccatggcaagtactggtgtgtctgcc
tcagcaggaggaactgttttgagctcccagggagacgacattctgcgcaaagactgcaag
ttcctgctggtggagaaggagaaggcacctgcaaaggagatggagctcttggtcatgaca
aaggacactggcaaagtctttagtggttctaacactggacttaatggaggatcttttgta
gaagacaccttgaagaaagagaagcagggattttcctcctcttatgctacagatactggc
ctaaaatcagatgcaaatggagggctgaaatccatgccaaaaagggacaaagaaacttat
gcagaaatacgaagtggtgatgcagggggtgcaattggatcagcaccatcctggtgtccc
tgtggttcctgctgtagctggtggaaatggctcctgggtttgcttctagcctggttgttt
ctccttggactgctttttggactgattgctctggctgaagaagtgagaaagctgaaatct
cgtgtggaagacctggaaaaaatcaatggtggcctcctggcaattaaccaagggaattca
aaaatagaaaaggatgtttcaagagtagacttccttcatggtaactcaccctccttgacc
tttccatatgaaaatgaagagtcagtctggttgatggtgaagagcagactgaataaggaa
atagaacgaggctacttccgaggggagaaaggagaacgtggtgagaaaggtgacatggga
atacaaggtcccaaaggtgatcaaggacttcctggtgctccaggcattcctggtccaatt
gggcatgcaggaccagaaggaccaaaaggccagaagggaagcatgggtgagcctggcatg
gaaggtcccatgggacaaagaggtagagaagggatgccagggcctcgaggggagccagga
ccacctggatttggagaaaaaggagacagaggtgctgttggtgagccaggtcctccaggg
ccacctggacccccaggttctactggcctaaaaggcctgatgggttctccaggcccacaa
ggtcctccaggtcctcccggcctacaaggatttagaggtgaagcaggactcccaggtgct
aaaggtgaaaaaggagccagtggaccccctggacccaaaggtgatcagggtgagaagggt
gctcgtggaatgacaggtgaacaaggctcaagaggaatacctggacctccaggagagcca
gggcctaaaggacctgtaggacaagctggtcgtgatggacagccaggtgaaaaaggtgaa
ccaggtcttatgggaatgccaggtgccagaggccctccaggacccactggagatgctgga
gagccaggtcttacaggacctcaaggaccgccaggacttccaggcaacccaggccgacca
ggggctaaaggagaacctggagctccaggaaaagtagtaaatgcagagggttcatcaact
attactctgccaggcccaccaggtcctccaggcccacctggccccactggtcccccaggt
gttccaggtcctgttggaccagctggtctccctggacagcaaggtccacggggtgagaaa
ggatccccaggtgaagctgtgatagaaaccatcagaacagaagtctcatcattagcatct
caaatgctgggagatttacatgggcgagcaggacccccaggtccccctggaccaccaggt
gaatctgtacagggacctcctggacctcgtggtcccccaggattgccaggacctccaggc
ccaccagggagaccaggatcatccatgtccacctcagaagcattcttcacaggcccacca
ggtccaccaggtccaccaggccctaagggagaccaaggcgaacgaggtccccggggattc
acaggagaaccgggtgaccctggcctttcagcgttctcctcccatggtgaaagagtcacc
atacagggacccccaggcccacctggcccacctggaccaaaaggtgatgcaggtgtccca
ggtgcacctggcatcccaggagcatctcgaggtggctccagacaaattcagggaccccca
ggacctcctgggccacctggtcctcctggcccaagtggaggttcatctcaggagattcag
cagtatgtgactgactacctgaagagtgacaacgtcagacattatttcactggtgcccaa
ggcccaccaggccctccaggtccacctggacttatcaccactgcagatgggatgaccttg
gattatgcagagctggctacccgtgtcatgagctatatgacaagctcttcaggtcgctac
gagtcattgtctagctcagtatccactacatccattttgtaccaagaacttctggacctg
ctgcaaagagaagaaattcgtcagtatctcattggacctcagggcccaccgggacctcct
gggccagggagagatggaatgtctctgtcactggattatgatgagctgacgaggcggttt
atcagctacttgtcaagttctgggatgagcattggactgcctggaccacctgggcctcca
ggatcacctggtatatcttacagtgacctgacagcttacctgcgaaactctgaattcagt
ggcattgttgggccccctggtcctacaggccctccaggacctccagggatccctggatca
ccaggcacctctctggaggacatctctgcctaccttcaaaatgttggatactcttccctt
tctggagttcggggcccacctggccctcctggccctccaggaccaccaggtttctctgga
accggcctcctgtcctatgctgacatcaccaacaatgacgagttcaggagtgagctgatc
cagtacctgaagagtgatgaagttcgaagctacatctcaggaccccctgggccccctggg
ccaccaggacccaagggagacagtggctttgtgtctgggtctatgtcttcatcataccaa
ggcttacgagcttctgagcacttgcatggaggatcccttggtgctgagggctcccacggg
ggctcactgggcacaggcagctcgtatggcagctccatgagcagcagatcctcttaccat
gcctccatgggcagcgatggcgcttacgatgcctccatgggcacagacaggtcctttgat
gggctgctgacagaggaggaaacactcagatcagcggggtcaagcagatcctacagcaac
tccttcactggttccctggattacaacgagctggcactccgtgtgtcagagagcctgcag
agccgaggtattctccaggacctgatgtcttacacagcacagggacctgcaggtccccca
ggccctcctggtccccctggcatcagcaagatctttgcagcctatggcaatgtcaccgca
gatctcatggacttctttagaacacatggtgccatccaggggccacccggtgaaaaggga
gagagaggttatcctggacccaaaggtgaccctgggccaatgggcccaccaggacgacac
gggcaaaggggaccaaaaggagaaaagggagagaaaggtgaacaactgtatgttggcaga
agaaaaagaagaactgttggtgtttaa
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