Lactuca sativa (garden lettuce): 111878773
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Entry
111878773 CDS
T05352
Name
(RefSeq) oligoribonuclease isoform X1
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
lsv
Lactuca sativa (garden lettuce)
Pathway
lsv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lsv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
111878773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsv03019
]
111878773
03009 Ribosome biogenesis [BR:
lsv03009
]
111878773
Messenger RNA biogenesis [BR:
lsv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
111878773
Ribosome biogenesis [BR:
lsv03009
]
Eukaryotic type
Pre-60S particles
RNases
111878773
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-GeneID:
111878773
NCBI-ProteinID:
XP_023731047
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Position
5:351010776..351013744
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AA seq
255 aa
AA seq
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MSTLSNAFSLLELDVEDDREETTNATDNKKKANGNHDKETDSLQDATLIKNDKGTRQTLD
MLEGEYRLPLVWIDLEMTGLNIEVDRILEIACVITDGKLTKSVEGPDLVIHQTKECLEKM
GEWCQDHHAASGLTERVIQSSISEKEAEQQVVDFVKKHVGTYTPLLAGNSIYVDFLFLKK
YMPDLASLFSHVVVDVSSIKALCLRWFPRVFYWFTDNKKAPKKENRHRAMDDIKESIAEL
KFYKENVFKSSKSKK
NT seq
768 nt
NT seq
+upstream
nt +downstream
nt
atgagcacactctcaaatgccttttctctgctagaactggatgttgaggatgatagggaa
gagacaaccaatgctactgataataaaaagaaagccaatggtaaccatgataaagaaact
gatagtcttcaagatgcaaccctaattaagaatgataaaggcactcgtcaaaccctagac
atgttagaaggagaatataggttgcctcttgtgtggattgacttggaaatgacaggattg
aatattgaagtagatagaatactggagattgcttgtgtgatcacagatgggaagttgaca
aaatctgtagagggtcctgacttggttatacatcaaacaaaagagtgtcttgaaaagatg
ggtgaatggtgtcaagatcatcatgctgcaagtggtttgactgaaagggtgatccaaagt
tccatcagtgaaaaagaagctgaacagcaggttgtagattttgtcaagaaacatgtgggc
acatatactcctctgcttgcaggaaattcaatttatgtcgatttccttttcttgaagaag
tacatgcctgatttggctagtcttttctctcatgtagttgttgatgttagcagcattaag
gctttatgtctccgttggttcccaagagtattttattggttcacagataacaagaaagct
ccaaagaaggagaacaggcatagagccatggatgacataaaagaaagcatagcggagctg
aaattctacaaggaaaatgtattcaaatcatcaaagtctaagaagtaa
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