KEGG   Lactuca sativa (garden lettuce): 111905574
Entry
111905574         CDS       T05352                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
lsv  Lactuca sativa (garden lettuce)
Pathway
lsv03030  DNA replication
lsv03410  Base excision repair
lsv03420  Nucleotide excision repair
lsv03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lsv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    111905574
   03410 Base excision repair
    111905574
   03420 Nucleotide excision repair
    111905574
   03430 Mismatch repair
    111905574
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lsv03032]
    111905574
   03036 Chromosome and associated proteins [BR:lsv03036]
    111905574
   03400 DNA repair and recombination proteins [BR:lsv03400]
    111905574
DNA replication proteins [BR:lsv03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    111905574
  DNA Replication Termination Factors
   ELG1-RFC complex
    111905574
Chromosome and associated proteins [BR:lsv03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    111905574
DNA repair and recombination proteins [BR:lsv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     111905574
  Check point factors
   HRAD17(Rad24)-RFC complex
    111905574
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 Rad17 RuvB_N AAA_11 AAA_16 Mg_chelatase AAA_5 AAA_14 AAA_assoc_2 ResIII SLFN-g3_helicase nSTAND3 AAA_24 DNA_pol3_delta PhoH AAA_2 AAA_18 AAA_28 AAA_7 AAA_19 AAA_30 bpMoxR RNA_helicase Parvo_NS1 AAA_25 DUF815 TIP49 ATPase_2 IstB_IS21 DUF3853 TIP49_C AAA_17 NB-ARC
Other DBs
NCBI-GeneID: 111905574
NCBI-ProteinID: XP_023757035
LinkDB
Position
9:complement(104964070..104966726)
AA seq 341 aa
MAPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTAL
AIAHQLYGPELYKSRVLELNASDERGINVVRTKIKNFAAVAVGSGHQGGYGYPCPPFKII
ILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIM
STRVLHICNEEGLNLDSEALSTLSSISQGDLRRAITFLQGAARLFGSSISSKDLISVSGV
VPQEVVGDLLASCKSGSFDSANKQVNNVIAEGYPVSQILSQLFDLVVESDDVSDEQKARI
CRKLGESDKCLVDGADEYLQLLDACSCMIKAFCNMPEGYSN
NT seq 1026 nt   +upstreamnt  +downstreamnt
atggcgccattgctgcagagctctcaaccttgggtcgagaaataccgacccagacgagtt
aaggatgttgcccaccaagacgaagttgtccgagtcctcaccaacacgctcgagaccacc
aattgtccacacatgctcttttatggcccacctggaaccggcaaaaccaccactgctctc
gccattgctcaccagctctacggtcctgaactatacaaatctagggttcttgagctgaat
gctagcgatgagcgtggaatcaatgtagttcgaactaaaatcaagaatttcgctgcagtt
gctgttggttctggacatcaagggggctatggttatccttgtccacctttcaagatcatc
atccttgatgaagctgattccatgactgaagatgctcagaatgccttacgtcgaactatg
gaaacctattcaaaagtaacaagattctttttcatatgcaattacatcagcaggatcata
gaacctcttgcttctagatgtgctaagtttaggtttaagccactttcagaagaaatcatg
agcactcgtgtgctacatatatgcaatgaggaagggcttaacttggactctgaggctctc
tcaaccttaagttccatatctcaaggagatcttcgtagagctatcacctttttacaggga
gctgctcgtttattcggatcctcaatttcttccaaggacttgattagtgtttcaggggtt
gtccctcaggaagttgttggggatcttcttgcatcttgtaaaagtggttcatttgactct
gcaaacaaacaagtgaataatgttattgcagaggggtatccagtcagccagattctctcc
cagttgtttgatttggtggttgaatctgatgatgtgtctgatgaacaaaaagcaagaata
tgtaggaaacttggtgaatccgataagtgccttgttgatggagcagatgagtatttgcag
ctgttggatgcatgcagttgtatgatcaaagcattttgtaacatgccagaaggatattct
aattag

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