Listeria welshimeri: lwe1346
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Entry
lwe1346 CDS
T00422
Symbol
pnpA
Name
(GenBank) polynucleotide phosphorylase (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lwe
Listeria welshimeri
Pathway
lwe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lwe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
lwe1346 (pnpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lwe03019
]
lwe1346 (pnpA)
03016 Transfer RNA biogenesis [BR:
lwe03016
]
lwe1346 (pnpA)
Enzymes [BR:
lwe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
lwe1346 (pnpA)
Messenger RNA biogenesis [BR:
lwe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
lwe1346 (pnpA)
Transfer RNA biogenesis [BR:
lwe03016
]
Prokaryotic type
tRNA degradation factors
lwe1346 (pnpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
RNase_II_C_S1
S1_2
KH_2
SPATA25
CvfB_2nd
RICTOR_M
DUF1773
Motif
Other DBs
NCBI-ProteinID:
CAK20764
UniProt:
A0AID2
LinkDB
All DBs
Position
1338193..1340364
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AA seq
723 aa
AA seq
DB search
MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAAVGSKKPRPGDFFPLTV
NYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLFAEGFRNEVQITSTVFSVD
QDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKYVINPTIEQAEKSDISLTVAG
TYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQQQIIAAVGKEKREIELFVSDPE
LEAEVKAASEGKMKVAIKTEEKKAREAAIEEVKEEILESYKAKELENETEILSEVAHILE
MIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVGMLPRVHGSGLFTRGQTQALSVCTLAP
LREHQIIDGLGTEEYKRFMHHYNFPQFSVGETGPRRAPGRREIGHGALGERALQYVIPSE
EDFPYTIRLVSEVLESNGSSSQASICGSTLAMLDAGVPIKAPVAGIAMGLVKLGDDYTIL
SDIQGMEDHFGDMDFKVAGTKDGITALQMDIKIDGLSRQILDEALTQAKEGRLHILEHLT
STISAPREELSAYAPKIITLNIKPEKIKDVIGPGGKQINAIIEETGVKIDIEQDGTVYIA
SQDQAMNRKAIAIIEDIVREVEVGEVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHER
VGKVEDILKLGDEVTVKVIEVDHQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKP
ESK
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaacaagtgttttcaacagaatgggcaggtaaaacattatctgttgaagta
ggtcaattagcaaaacaagcaagtggggcagcattaattcgttacggtgatacggtcgtt
ttaactgcagcagtaggttctaaaaaaccacgtccgggagactttttcccattaacagtt
aactatgaagaaaaaatgtattctgttgggaaagttcctggtggattcttaaaacgtgaa
ggacgtccaagtgaccgtgcaacattaacagcgcgtctaattgaccgtccaattcgtccg
ttatttgcagaaggttttcgtaatgaagttcaaatcacttctactgttttcagtgtagac
caagattgttcaccagaaatggcagcaatgcttggatcctctgtggcattggttatttct
gatattccatttgaaggaccaatcgctggggtagatgttggtcgtattgatggcaaatac
gttattaacccaacaatcgagcaagcagaaaaaagtgatattagtttaactgttgctgga
acttatgatgcaattaacatggtggaagctggagcaaaagaagtttcagaagaagcaatg
ctagaagcaatcatgtttggtcatgaagaaattaaacgtctttgtgaattccaacaacaa
ataattgcagctgttggtaaagaaaaacgcgaaatcgaactttttgtaagcgatcctgaa
cttgaggcagaagtaaaagcagcaagtgaaggtaaaatgaaagtagctatcaaaacagaa
gagaaaaaagcgcgtgaagctgctattgaagaagtgaaagaagaaattttagaaagctat
aaagcaaaagaattagagaatgaaacagaaattcttagcgaagtagcgcatattcttgaa
atgattgaaaaagacgaaatgcgtcgtttgatttctcaagataaaatccgtcccgatggt
cgtaaagtaaacgaaatccgcccactttcttctgaagttggtatgcttccacgtgtccat
ggttctggtttatttactcgtggtcaaacacaagctttaagtgtatgtacattagcaccg
ctacgtgagcaccaaatcattgatggtctcgggacagaagaatataaacgtttcatgcac
cattacaatttcccgcaattcagtgttggtgaaactggtcctcgtcgtgctcctggtcgt
cgtgaaattggtcacggtgcgttaggtgagcgtgcattacaatacgttattccttctgaa
gaagatttcccatacactatccgtttagtatcagaagttcttgaatcaaatggttctagt
tcacaagcaagtatttgtggttccacacttgcaatgcttgacgcgggagttccaattaaa
gcgccagttgcaggtattgcgatgggacttgttaaactcggtgatgattatacaattctt
tctgatattcaaggtatggaagatcactttggcgatatggatttcaaagtagctggaaca
aaagatggtatcacagctctccaaatggatatcaaaattgatggcttgagtcgtcaaatt
ttagatgaagcattaacacaagcgaaagaagggcgtttacacattctagaacacttaaca
agcaccattagcgcacctcgtgaagaactttctgcttatgcaccaaaaattattacactt
aacatcaaaccagaaaaaattaaagatgttattggacctggcggaaaacaaatcaatgca
atcatcgaagaaactggcgtaaaaatcgatatcgaacaagatggtacagtttacattgca
tcacaagaccaagcaatgaaccgtaaagccattgctatcatcgaagacatcgttcgtgaa
gtagaagtcggtgaagtttacactggtaaagttcgtcgtatcgaaaaatttggcgcattt
gttgaattgtttaaagggacagatggtttagttcatatttctgaattagcacatgaacgt
gttggtaaagtagaagatattttaaaacttggggatgaagtaactgtcaaagttattgaa
gtagatcaccaaggacgagttaacttatcacgtaaagctttgctagagaaaaaagaacaa
ccagaaggcgacaaaaaaccgcaagcagagaaaaaattctatccaaaaacaaaaaaacca
gaatctaaataa
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