KEGG   Lysobacter yananisis: RDV84_14330
Entry
RDV84_14330       CDS       T09342                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
lya  Lysobacter yananisis
Pathway
lya03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:lya00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RDV84_14330 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:lya03400]
    RDV84_14330 (ligD)
Enzymes [BR:lya01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RDV84_14330 (ligD)
DNA repair and recombination proteins [BR:lya03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RDV84_14330 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: WMT01174
UniProt: A0AA51XFF4
LinkDB
Position
3381215..3383839
AA seq 874 aa
MSLHEYRRKRRFDRTREPEPGAPPRGERAIFVVQLHHASHRHYDFRLQVGDALKSWAVPK
GPSYDPAVKRMAVEVEDHPLGYAGFEGEIPHGEYGGGHVARFDTGVWATDGDPQAQLAKG
HLRFELFGRKLKGGWHLVRSGKPARQPQWLLFKDRDEYAGTLEADDLLADVASPPPADAQ
RAGRGKPRKRRLAEVAPARKRRRDWAAAARKLPGARRAPFDGGAFELQLARLVEAPPSGE
QWLHELKWDGYRIGVGVAAGRARLWSRNALEWTRKIPEIAAAVEALGLDCAALDGELIAG
RGAREDFNLLQATLSGEKQGALSLVVFDLLHLDGWDLSAAPLLQRKALLEQLLQRAGPHL
RYSSHILGDGERAYALADEQGFEGIVSKRADRAHHRGRSDEWRKSKRLASDEFAVVGYTP
PKGARSGFGALLLARPDPAHGWSYAGRVGSGFSADLLARISKRLPRGAAAPTVHVPPHDT
DLRAARWFAPALVVEAFYRGVGGHGLLRQASFKTLREDKTPDALADGDRGPGAATRLHSD
SEPPPKRTAMTRKAAKASAGKAKAGKTRTGKSQAAADLDDFRLTSPERVVYPDIGASKRD
VAAYYLAMADWLLPDIVDRPLSIVRCTQGAARPCFFQKHHTAGLDDVDSVSLEEESGQRA
DYLVVRDLAGLMNLVQFNALEFHPWGAKAQRPDRADRIVFDLDPGSGVPWTEVIAAARQL
RSLLAKLELQSFVRTSGGKGLHVVVPLNPGCDWDLVKPFAHSFAETLAQMEPLRYIATAT
KKFRNGKIFVDYLRNGRGATSVASFSLRAREGAPVAMPLRWEELGRVKSGHAFDIRSAQA
RVKRLRRHPWAGIDAVRQDLDRLAERLQRLRPDD
NT seq 2625 nt   +upstreamnt  +downstreamnt
atgagcctgcacgaataccggcgcaagcggcgcttcgaccgcacccgcgagcccgaaccg
ggcgcgccgccgcgcggcgagcgcgcgattttcgtcgtccagctgcaccacgccagccat
cgccactacgacttccgcctgcaggtcggcgacgcgctcaagagctgggcggtgcccaag
gggccgtcctacgatccggcggtcaagcgcatggcggtggaagtcgaggaccacccgctc
ggctacgccggtttcgaaggcgagattccccacggcgaatacggcggcggccacgtcgcg
cggttcgacaccggggtgtgggcgaccgacggcgatccgcaggcgcaactggccaagggc
cacctgcgcttcgaactgttcggacgcaagctaaagggcggctggcacctggtgcgctcg
ggcaagcccgcgcgccagccgcaatggttgttgttcaaggaccgcgacgaatacgccggc
acgctcgaagccgacgacctgctcgccgacgtcgcctcgccgccgccggccgacgcgcag
cgcgccggccgcggcaagccgcgcaagcgccgcctggccgaagtcgcgccggcgcgcaag
cggcgccgcgactgggccgcggccgcgcgcaagctgcccggcgcgcggcgggcgccgttc
gacggcggcgcgttcgagctgcagttggcacgcttggtcgaagcgccgccttcgggcgaa
caatggctgcacgaactcaaatgggacggttaccgcatcggcgtcggcgtggccgccggc
cgcgcgcggctgtggtcgcgcaacgcgctggagtggacccggaagattcccgaaatcgcc
gccgcggtcgaagcgctgggcctggactgcgcggcgctggacggcgaattgatcgccggc
cgcggcgcgcgcgaggacttcaacctgctgcaggcgacgctgtcgggcgagaaacagggc
gcgctgtcgctggtggtgttcgacctgctgcacctggacggctgggacctcagcgccgca
ccgctgctgcaacgcaaggcgctgctggaacagctgttgcagcgggccgggccgcatttg
cgctacagctcgcacatcctcggcgacggcgagcgcgcctacgcgctggccgacgaacag
ggcttcgaaggcatcgtgtccaagcgcgccgaccgcgcccatcatcgcggccgcagcgac
gaatggcgcaagagcaagcgcctggccagcgacgaattcgccgtggtcggctacacgccg
ccgaagggcgcgcgcagcgggttcggcgcgctattgctggcgcggccggacccggcgcac
ggctggtcctacgcgggccgcgtcggcagcggtttttccgccgacttgctggcgcggatc
agcaagcgcctgcccaggggcgccgccgcgccgacggtgcacgtgccgccgcacgacacc
gacctgcgcgcggcgcgctggttcgcgccggcgttggtggtcgaggcgttctatcgcggc
gtcggcggccacggcctgctgcggcaggcctcgttcaagacgttgcgcgaggacaagacg
cccgacgcgctggccgacggcgaccgcggtccgggcgccgcgacccggctccactccgac
tccgaaccgccaccgaagcgaaccgccatgacccgcaaggccgccaaagccagcgccggc
aaggccaaagccggcaagacgcgcaccggcaagtcccaggctgccgccgacctcgacgac
ttccgcctcaccagccccgaacgcgtggtctatcccgacatcggcgcgagcaagcgcgac
gtcgccgcctactatctggcgatggccgactggctgttgccggacatcgtcgaccggccg
ctgtcgatcgtgcgctgcacccagggcgcggcgcggccgtgcttcttccagaagcaccac
accgccgggctagacgacgtggacagcgtcagcctggaagaggaatcgggccagcgcgcc
gattacctggtggtgcgcgatctggccggactgatgaacctggtccagttcaacgcgctg
gagttccatccgtggggcgcgaaggcgcagcggcccgatcgcgccgaccgcatcgtgttc
gatctcgaccccggcagcggcgtgccctggacggaggtgatcgccgccgcgcgccagttg
cgctcgctgctggccaagctggaactgcagtcgttcgtgcgcacctccggcggcaagggc
ctgcatgtggtggtgccgctgaaccccggctgcgattgggacctggtcaaaccgttcgcg
cacagctttgccgagaccttggcgcagatggagccgctcaggtacatcgccaccgcgacc
aagaaattccgcaacggcaagatcttcgtcgactacctgcgcaacggccgcggcgccacc
agcgtggcctcgttctcgctgcgcgcgcgcgagggcgcgccggtggcgatgccgctgcgc
tgggaggaactgggccgggtcaagagcggccacgcgttcgacatccgctccgcgcaggcg
cgggtcaagcgcctgcgccggcatccatgggcggggatcgacgcggtacgccaggacctg
gaccgcctggccgaacgcctgcagcggctgcggccggacgattga

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