Lysobacter yananisis: RDV84_14330
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Entry
RDV84_14330 CDS
T09342
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lya
Lysobacter yananisis
Pathway
lya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RDV84_14330 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lya03400
]
RDV84_14330 (ligD)
Enzymes [BR:
lya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RDV84_14330 (ligD)
DNA repair and recombination proteins [BR:
lya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RDV84_14330 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
WMT01174
UniProt:
A0AA51XFF4
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All DBs
Position
3381215..3383839
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AA seq
874 aa
AA seq
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MSLHEYRRKRRFDRTREPEPGAPPRGERAIFVVQLHHASHRHYDFRLQVGDALKSWAVPK
GPSYDPAVKRMAVEVEDHPLGYAGFEGEIPHGEYGGGHVARFDTGVWATDGDPQAQLAKG
HLRFELFGRKLKGGWHLVRSGKPARQPQWLLFKDRDEYAGTLEADDLLADVASPPPADAQ
RAGRGKPRKRRLAEVAPARKRRRDWAAAARKLPGARRAPFDGGAFELQLARLVEAPPSGE
QWLHELKWDGYRIGVGVAAGRARLWSRNALEWTRKIPEIAAAVEALGLDCAALDGELIAG
RGAREDFNLLQATLSGEKQGALSLVVFDLLHLDGWDLSAAPLLQRKALLEQLLQRAGPHL
RYSSHILGDGERAYALADEQGFEGIVSKRADRAHHRGRSDEWRKSKRLASDEFAVVGYTP
PKGARSGFGALLLARPDPAHGWSYAGRVGSGFSADLLARISKRLPRGAAAPTVHVPPHDT
DLRAARWFAPALVVEAFYRGVGGHGLLRQASFKTLREDKTPDALADGDRGPGAATRLHSD
SEPPPKRTAMTRKAAKASAGKAKAGKTRTGKSQAAADLDDFRLTSPERVVYPDIGASKRD
VAAYYLAMADWLLPDIVDRPLSIVRCTQGAARPCFFQKHHTAGLDDVDSVSLEEESGQRA
DYLVVRDLAGLMNLVQFNALEFHPWGAKAQRPDRADRIVFDLDPGSGVPWTEVIAAARQL
RSLLAKLELQSFVRTSGGKGLHVVVPLNPGCDWDLVKPFAHSFAETLAQMEPLRYIATAT
KKFRNGKIFVDYLRNGRGATSVASFSLRAREGAPVAMPLRWEELGRVKSGHAFDIRSAQA
RVKRLRRHPWAGIDAVRQDLDRLAERLQRLRPDD
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacgaataccggcgcaagcggcgcttcgaccgcacccgcgagcccgaaccg
ggcgcgccgccgcgcggcgagcgcgcgattttcgtcgtccagctgcaccacgccagccat
cgccactacgacttccgcctgcaggtcggcgacgcgctcaagagctgggcggtgcccaag
gggccgtcctacgatccggcggtcaagcgcatggcggtggaagtcgaggaccacccgctc
ggctacgccggtttcgaaggcgagattccccacggcgaatacggcggcggccacgtcgcg
cggttcgacaccggggtgtgggcgaccgacggcgatccgcaggcgcaactggccaagggc
cacctgcgcttcgaactgttcggacgcaagctaaagggcggctggcacctggtgcgctcg
ggcaagcccgcgcgccagccgcaatggttgttgttcaaggaccgcgacgaatacgccggc
acgctcgaagccgacgacctgctcgccgacgtcgcctcgccgccgccggccgacgcgcag
cgcgccggccgcggcaagccgcgcaagcgccgcctggccgaagtcgcgccggcgcgcaag
cggcgccgcgactgggccgcggccgcgcgcaagctgcccggcgcgcggcgggcgccgttc
gacggcggcgcgttcgagctgcagttggcacgcttggtcgaagcgccgccttcgggcgaa
caatggctgcacgaactcaaatgggacggttaccgcatcggcgtcggcgtggccgccggc
cgcgcgcggctgtggtcgcgcaacgcgctggagtggacccggaagattcccgaaatcgcc
gccgcggtcgaagcgctgggcctggactgcgcggcgctggacggcgaattgatcgccggc
cgcggcgcgcgcgaggacttcaacctgctgcaggcgacgctgtcgggcgagaaacagggc
gcgctgtcgctggtggtgttcgacctgctgcacctggacggctgggacctcagcgccgca
ccgctgctgcaacgcaaggcgctgctggaacagctgttgcagcgggccgggccgcatttg
cgctacagctcgcacatcctcggcgacggcgagcgcgcctacgcgctggccgacgaacag
ggcttcgaaggcatcgtgtccaagcgcgccgaccgcgcccatcatcgcggccgcagcgac
gaatggcgcaagagcaagcgcctggccagcgacgaattcgccgtggtcggctacacgccg
ccgaagggcgcgcgcagcgggttcggcgcgctattgctggcgcggccggacccggcgcac
ggctggtcctacgcgggccgcgtcggcagcggtttttccgccgacttgctggcgcggatc
agcaagcgcctgcccaggggcgccgccgcgccgacggtgcacgtgccgccgcacgacacc
gacctgcgcgcggcgcgctggttcgcgccggcgttggtggtcgaggcgttctatcgcggc
gtcggcggccacggcctgctgcggcaggcctcgttcaagacgttgcgcgaggacaagacg
cccgacgcgctggccgacggcgaccgcggtccgggcgccgcgacccggctccactccgac
tccgaaccgccaccgaagcgaaccgccatgacccgcaaggccgccaaagccagcgccggc
aaggccaaagccggcaagacgcgcaccggcaagtcccaggctgccgccgacctcgacgac
ttccgcctcaccagccccgaacgcgtggtctatcccgacatcggcgcgagcaagcgcgac
gtcgccgcctactatctggcgatggccgactggctgttgccggacatcgtcgaccggccg
ctgtcgatcgtgcgctgcacccagggcgcggcgcggccgtgcttcttccagaagcaccac
accgccgggctagacgacgtggacagcgtcagcctggaagaggaatcgggccagcgcgcc
gattacctggtggtgcgcgatctggccggactgatgaacctggtccagttcaacgcgctg
gagttccatccgtggggcgcgaaggcgcagcggcccgatcgcgccgaccgcatcgtgttc
gatctcgaccccggcagcggcgtgccctggacggaggtgatcgccgccgcgcgccagttg
cgctcgctgctggccaagctggaactgcagtcgttcgtgcgcacctccggcggcaagggc
ctgcatgtggtggtgccgctgaaccccggctgcgattgggacctggtcaaaccgttcgcg
cacagctttgccgagaccttggcgcagatggagccgctcaggtacatcgccaccgcgacc
aagaaattccgcaacggcaagatcttcgtcgactacctgcgcaacggccgcggcgccacc
agcgtggcctcgttctcgctgcgcgcgcgcgagggcgcgccggtggcgatgccgctgcgc
tgggaggaactgggccgggtcaagagcggccacgcgttcgacatccgctccgcgcaggcg
cgggtcaagcgcctgcgccggcatccatgggcggggatcgacgcggtacgccaggacctg
gaccgcctggccgaacgcctgcagcggctgcggccggacgattga
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