Lysinibacillus sp. CD3-6: FH508_0011165
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Entry
FH508_0011165 CDS
T08381
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lyc
Lysinibacillus sp. CD3-6
Pathway
lyc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lyc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FH508_0011165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyc03400
]
FH508_0011165
Enzymes [BR:
lyc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FH508_0011165
DNA repair and recombination proteins [BR:
lyc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FH508_0011165
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UED82429
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Position
2295572..2297398
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AA seq
608 aa
AA seq
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MKPMLLTEAIEPPKGEEWFYEAKYDGFRCIIQWTEEEPILISRNGNVLNQLFPEIIAYCK
DLYKKIKAYLPLTFDGELVFLMNNYKSEFSIVQQRGRMQNKEVIAAHAKSFPCHYVVFDL
LQFKGESQANRYLKTRKQQLTTLFTKLKLSTTINYEDNRPLQAIDVFEDTSAIWHLITTY
NGEGLIAKKKTSKWQEDVRTNQWMKIKNWRMVTVIVTKYDKGNGYFQGCVYRQGELTEVV
VFRHGMKNDELNTLIAFFKANGIKQNETWELEPSICVDIACIDFDGKKLREPRFHAFRLE
MDPQECNWQQMHRQLMPIPESVQVTHPNKPVWPEIGITKDSYLHYLQFISPLILPLLRQR
PVTLIRFPHGVSGESFYQKSSPDNLPEFVATEKVSEHHGILCNNLETLLWLGNQLALEIH
IPFQTIDTDKPTEIVFDLDPPNVDAFSLAISAARHLKEIFDYFKLQSFVKTSGGKGLQVY
IPLPYNTFSYEQVRQFTEFVCRFLCEQKTGLYTIERLKKNRNDRLYLDYVQHAEGKTIIS
PFSTRGNPMGLVATPLYWDEVNEQLRPELFTIPTVIERIKRVGNPFRNFEAIGEEQDFHA
VLQHLTNQ
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgttattaacagaagcaatcgaaccgccaaaaggagaagaatggttttat
gaagcaaagtacgatggttttcgttgtattatacagtggaccgaagaagaacctatttta
atcagtagaaatgggaatgtacttaatcagttgttcccagagattattgcgtattgcaaa
gatctttacaaaaaaataaaagcatatttacccttaacatttgatggtgagctagtattt
ttaatgaacaactataaaagtgaattctcaattgtccaacaaagagggagaatgcaaaat
aaagaagtgattgctgcacatgcaaaatcatttccatgtcattatgttgtatttgattta
ctgcaatttaaaggtgaaagtcaagcgaatcgatatttaaaaacacgtaaacagcaacta
acgacactttttacgaaattgaagttgtcgactactattaattatgaagataatcgaccc
ctgcaagcaatcgatgtttttgaggacacctcagcgatatggcatttgataactacctat
aatggcgaaggtcttattgcaaagaaaaaaacaagtaagtggcaggaagatgtacgcacg
aatcaatggatgaagataaaaaattggagaatggttacggtcattgtcacgaaatatgat
aaaggaaatggttattttcaaggttgtgtttatcgacagggtgaattaacagaagtggtt
gtttttagacatggcatgaaaaatgacgaattaaacacactaatagcattttttaaagca
aatggtattaaacaaaatgaaacatgggaattagagccatctatctgtgttgatattgcc
tgtatagattttgatggcaaaaagttaagagagccacgatttcatgcttttcgattagag
atggatccacaggaatgtaattggcaacaaatgcatcgacaacttatgccgatacctgaa
agtgtacaagtaacacatccaaacaagcctgtatggccagaaatcggtattacaaaagat
agctatttgcactatttacaattcatatcaccgttaatattgcctttgttgcgtcaacga
ccagttacattaatccgctttcctcatggcgtgtcaggagagagcttttatcaaaaaagc
agtcctgacaatctcccagagtttgttgcaacagagaaagttagtgaacatcatgggatt
ttatgcaacaatcttgagacattattgtggctaggaaatcagcttgcgttagaaattcac
attccctttcaaacaattgatactgataagccgacagaaattgttttcgatttagaccca
cctaatgtagatgcattttcacttgcaataagtgctgcacgccacctaaaagaaatattt
gattattttaagttacagtcatttgttaaaacttcagggggcaaaggcctacaagtttat
atacctttaccgtataatactttttcatatgagcaagttcggcaatttacagagtttgta
tgtcgttttttatgcgagcaaaaaacgggattatatacaattgagcggttaaagaaaaat
agaaatgaccgattgtatttagactatgtacaacatgcggaaggaaagacgattatttca
ccattttccactcgcggtaatccaatgggcttagtagcgacaccgttatattgggatgaa
gtaaatgaacagcttcgaccagaactttttacaatacctactgtcattgagcgaattaaa
cgggttggtaatccttttagaaattttgaagcaataggggaggaacaggattttcatgct
gtgctccagcatttaactaatcaatga
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