Lysinibacillus sp. SGAir0095: C1N55_13980
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Entry
C1N55_13980 CDS
T06028
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
lyg
Lysinibacillus sp. SGAir0095
Pathway
lyg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
lyg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C1N55_13980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyg03400
]
C1N55_13980
Enzymes [BR:
lyg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
C1N55_13980
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
C1N55_13980
DNA repair and recombination proteins [BR:
lyg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
C1N55_13980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
DZR
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
QCR33222
UniProt:
A0A4P8S565
LinkDB
All DBs
Position
complement(2819846..2820718)
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AA seq
290 aa
AA seq
DB search
MPELPEVEGVVRALVPAVEGKTITKVELSKTIYSSFGLGKQCIVKNIEPHLFEEVMQGMN
IQQITRRSKYIYFHIEKNEEKFLFVNHLGMSGAWFVVKSLSDITEEKFRKHVHAIFTLDS
GEQLVYSDIRRFGELRFIKKLEEHPPLLLMAPEPFETDAYDFFIEKCELPKYQNKPIKEV
IMDGQVISGCGNIYATEALFKMGIHPSRKTKRISSKRKLELFEAIRTILQESIEMGGSTI
SDYRNINGEAGGMQNRLKMYGKKFCPQCNTATKSLVIGGRTSVYCPKCQH
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattaccagaggtagaaggtgttgttcgggcactcgtgcctgcagttgaagga
aagaccatcacgaaggtggaactatctaaaacgatatacagctcctttggtctaggcaag
caatgcattgtcaagaatatagagccgcacctttttgaagaagtaatgcaaggaatgaat
attcagcagattacacgtcggtcaaagtatatttattttcatatagaaaaaaatgaagaa
aagtttcttttcgtcaatcatttagggatgtccggtgcatggtttgttgtgaaaagctta
agtgatattacagaagaaaagtttcgtaagcatgtacatgcaatttttactttagattct
ggagagcaattagtttattcagatatacgacgatttggagagcttcgttttattaaaaag
cttgaggagcatccgcctcttcttctaatggcaccggagccttttgaaacggatgcatat
gatttctttatagaaaaatgcgagttgccaaaatatcagaacaagcctattaaagaagta
atcatggacggacaagtcatttcaggctgcgggaatatttatgctacagaagctttgttt
aaaatgggcatccatccttcaaggaaaacaaaacgcatcagtagcaagcgaaaacttgaa
ttatttgaagccattcgaactattctacaggaaagtattgagatgggtggttctacaatc
tcggattaccgcaatataaacggagaagctggtgggatgcaaaaccgtttaaaaatgtat
ggcaagaagttttgccctcaatgtaatacagctacaaaatcattagtaatcggcgggcgt
acttcggtgtattgtccgaaatgtcagcattaa
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