Lysinibacillus sp. PLM2: MTP04_34930
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Entry
MTP04_34930 CDS
T09546
Symbol
ligd
Name
(GenBank) bifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
lyp
Lysinibacillus sp. PLM2
Pathway
lyp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lyp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTP04_34930 (ligd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lyp03400
]
MTP04_34930 (ligd)
Enzymes [BR:
lyp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTP04_34930 (ligd)
DNA repair and recombination proteins [BR:
lyp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTP04_34930 (ligd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
BDH63363
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All DBs
Position
3569433..3571283
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AA seq
616 aa
AA seq
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MKPMLLTASDDLPSTKDWIYEVKYDGFRCIIHWDKTGIQIMSRNEKDLTNYFPEIVTFSE
IAKDKVYPFLPLTLDGEICYLINDYKSNFSIVQTRGRMRNEDVILNSAKKFPCNLIVFDL
IRYKGLDISDYVLNERKALLKSLFEAIDFSTTINYEKKGHIQLIDVFQKDQLAMDAVKNH
SGEGVVAKHLSSTWDSGVRTTHWLKVKNWCYVTVILTKYDQENGYFHGSIYKQDQLIEIT
VFKHGFSEQQFQTLVTFVKSNGRQATSETWEIDPSICVDVACIDFDGKKLREPRFSKFRF
DLQPDHINWKTMIRQLNPIPERVQITHPDKPIWPKVNVDKDDYLYYLQHVSPYFLPFLKN
RYLTAIRYPHGVPGESFYQKNAPDYKPSFIATKMEEDINYILCNNIETLLWLGNQVVIEY
HIPFQTVDTHYPTEIVFDLDPPSVNEFSLAIEAAIRMKSIFDQFGLVSFVKTSGGKGLQV
YIPLPKNTFTYEDTRIFTEFVCTFLCEQEPNWFTMERLKKNRDQKLYLDFIQHAYGKTII
APYSPRGNEQGLIATPLNWEEINEKLTPALFSIPQVIERLKINGDPFREFREVGEKQNFN
EVLQNLKQLVKARKGK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaatgctcttaaccgcatcagacgatttaccttcaacaaaagattggatatat
gaagtgaaatatgatggatttcgttgcatcattcactgggataaaacaggaatccaaatt
atgagtcgaaacgaaaaagacttaacaaattactttcccgagattgtaacattttctgaa
atagcaaaggacaaagtatatcctttccttcctttaacattagatggggaaatttgctac
cttataaatgactataaaagtaacttttcgattgttcaaactcgtggaagaatgcgaaat
gaagatgtaatactaaatagtgcaaaaaaattcccatgtaatcttatcgtatttgacctc
atccgatataaaggattagatatatctgattatgtcctgaacgaacgaaaggcattgtta
aaatctctttttgaagccatcgatttttcgacaacaattaattacgaaaaaaagggacat
attcaattaatagatgtatttcaaaaagatcaactagctatggatgcagtaaaaaatcat
agtggagaaggagtagttgcaaagcatctatctagtacttgggacagtggtgtacgaacg
actcattggttaaaagtgaaaaattggtgttatgtaactgtcattttgaccaagtatgat
caagaaaatggttatttccacggatctatttataagcaagatcaactaattgaaatcact
gtttttaagcatggattttcagagcagcaatttcaaacacttgttacttttgtcaaaagt
aatggtcgacaagcaacatctgaaacttgggaaattgacccttccatttgtgtagatgtt
gcatgcattgactttgacggtaagaagttgagagaacctcgtttttctaaatttcggttt
gatttgcaacctgatcacattaattggaaaacaatgatcagacaattaaatccaattcct
gaaagagtacaaattacacatcctgataaaccaatttggccaaaggtaaatgttgataag
gacgactatttatattatttacagcatgtgtcaccatactttcttccttttctaaaaaat
cgatacttaacggcaatccgttatcctcacggagttcctggtgaaagcttctatcaaaaa
aatgcaccggattacaaaccttcttttattgctactaagatggaagaagatatcaattac
attttgtgtaataatattgagacgttattatggttaggaaatcaggttgttatcgaatat
catatcccttttcaaacggtggatacacattatcctactgaaattgttttcgatctcgat
ccgccttcagtgaatgaattttctttagctattgaagcagcaataagaatgaaatcaatt
tttgaccaatttggattagtttcgtttgtaaaaacatccggtggaaagggattgcaggtg
tatatccctttgcctaaaaatacttttacctacgaggatacacgaattttcacggaattt
gtatgtacatttttatgtgagcaagagcctaattggtttacaatggagagattaaaaaag
aatcgcgatcaaaagctttatcttgattttattcaacatgcctatgggaaaacaattata
gccccttattcaccaagagggaatgaacaagggttaattgcaacaccactgaactgggaa
gaaataaacgaaaaacttacacccgctttattttctattccacaggtaattgagagatta
aaaattaacggagacccattccgggaatttagagaagttggagaaaaacaaaattttaat
gaggtacttcagaatttaaaacaattagtaaaagcacgtaaggggaaataa
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