Magnetospira sp. QH-2: MGMAQ_2763
Help
Entry
MGMAQ_2763 CDS
T03795
Symbol
rpoC
Name
(GenBank) RNA polymerase, beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
magq
Magnetospira sp. QH-2
Pathway
magq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
magq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MGMAQ_2763 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
magq03021
]
MGMAQ_2763 (rpoC)
03400 DNA repair and recombination proteins [BR:
magq03400
]
MGMAQ_2763 (rpoC)
Enzymes [BR:
magq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MGMAQ_2763 (rpoC)
Transcription machinery [BR:
magq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MGMAQ_2763 (rpoC)
DNA repair and recombination proteins [BR:
magq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MGMAQ_2763 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CCQ74614
UniProt:
W6KBW4
LinkDB
All DBs
Position
complement(2798507..2802712)
Genome browser
AA seq
1401 aa
AA seq
DB search
MNELMKLFGQVSGTQRFDKIKISIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGITCEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLMDMTLKDLERILYFENHVVMEPGLTPLKQHELLSEEQYQSAVDEYGEDAFTAG
IGAEAIKEMLSQIDLEDELDQVRIDLKETSSEARRKKLVKRLKLVEAFLESGARPEWMIL
DVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPEIIVRNEKRML
QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP
DLMLHQCGLPKKMALELFKPFIYSKLELYGMATTIKAAKRMVEKERPEVWDILEEVIREH
PVMLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYMTLMREDEKGEGMAFADMGEMQQALDM
GAVSLHAQITARYHTFDEDGNPVVQRVTTTPGRLMVSELLPKTAKTPFDLVNKLLTKKEI
SNVMDAVYRHCGQKESVIFADKLMGLGFKQACVAGISFGKDDLVVPDEKEVLVGDTETSV
KEFEQQYQDGLITQGEKYNKVVDAWSHCTDAVADAMMKEIQRDKKGEPVNSVYMMAHSGA
RGSPAQMKQLAGMRGLMAKPDGSIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKT
ANSGYLTRRLVDVAQDCIITEHDCGTDKYLTAQALIEGGDVVVPLADRILGRSASEDIIN
PETGEVMVAAGELIHEKEADAIEAVGIETVKIRSVLTCKSQVGVCGTCYGRDLARGTPVN
MGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSKIEASYDGKVKLENCTTVKDSA
GVSVVMSRNAEMVLTDETGREKARHRVAYGTKLVVGEGQDVERGDKLAEWDPYTLPIITE
KDGIINFMDMVEGLSMTEVVDEATGLSSKVVTDWKQQPRGSDLKPRITLRDDAGELLTLD
NGLEARYFMSVDAILSVENGQKVHAGDVLARIPRESAKTRDITGGLPRVAELFEARKPKD
HAIISDIDGRVEFGKDYKNKRRILVAPEAEDEDPREYLIPKGKHISVQEGDFVRRGDPLM
DGNPVPHDILRVMGVEALAEYLINEIQDVYRLQGVKINDKHIEVIVRQMLQKVEVMEPGD
TTFLVGELVDRIEFAVANQKVVDAGEKPAAAEPVLQGITKASLQTHSFISAASFQETTRV
LTEASVSGKEDTLLGLKENVIVGRLIPAGTGSVMNRFRQVAADRDRELAAQQQEEDDELS
LPIGTLPEEAADDAFAPPTEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaattgatgaagctgttcggacaggtgtccgggacccagcggttcgacaagatc
aagatttccatcgcctcaccggaacggatccgttcctggtctttcggggaaatcaagaag
cctgaaaccatcaactaccggaccttcaagccggagcgggacggcctgttctgcgcccgg
atttttggtccgatcaaggactatgaatgcttgtgcggcaagtacaagcggatgaaatac
aagggcatcacctgtgaaaagtgcggcgtcgaggtcactttgaccaaggtgcggcgcgag
cgcatgggccatatcgaactggccagcccggtggctcacatctggttcttgaagtcgttg
ccgtcacgcatcggcttgttgatggatatgaccttgaaggacttggagcgtatcctctac
ttcgagaaccatgtggtcatggagccgggcctgaccccgctgaagcagcatgagctgctc
agcgaggaacagtatcagtcggccgtcgacgagtatggcgaggatgccttcaccgccggg
atcggcgccgaggcgatcaaggaaatgctgtcgcagattgatctggaagacgaactggat
caggtccgcatcgatttgaaggagacctcttcggaagcccgccgcaagaagctggtcaag
cgtctgaagctggtcgaggccttcttggaatccggcgcccgtccggaatggatgatcctc
gacgttgtcccggtcattccgccggaactgcgtccgctggtgcctttggatgggggccgc
tttgcgacctccgatctgaacgatctgtaccggcgcgtcatcaaccgcaacaaccgcctt
aaaaggctgatcgaactgcgggccccggaaatcatcgtgcgcaatgaaaagcgcatgttg
caggaatcggtggatgccctgttcgacaacggtcgtcgcggtcgggccatcaccggcgcc
aacaagcgtccgctgaagtccctgtccgatatgctcaagggcaagcaaggccgcttccgg
cagaacctgctcggcaagcgcgtcgactactccgggcggtcggtgatcgtggtgggtccc
gatctgatgctgcatcagtgcggactccccaagaagatggccttggaactgttcaagccg
ttcatctactcaaagctggaactctacggcatggccaccaccatcaaggcggccaaacgc
atggtggaaaaggaacgtcccgaggtttgggatattctcgaagaggtgatccgtgagcat
ccggtgatgctcaaccgggcgccgaccttgcaccgtctgggcatccaggccttcgaaccg
aagctgatcgagggcaaggccatccagctgcatccgctagtctgcaccgcgttcaacgcc
gacttcgacggtgaccagatggcggttcatgtgccgttgtccttggaggcgcagttggaa
gctcgcgtgctgatgatgtccaccaacaacatcctcagccccgccaatggcaaaccgatt
atcgtgccgtcgcaggatatcgtgctgggtctttattatatgaccttgatgcgcgaggac
gaaaagggcgagggcatggcctttgccgacatgggcgaaatgcaacaggccctggacatg
ggtgccgtgagcttgcatgcccagatcacggcccgttatcacacctttgacgaagacggc
aatccggtggtgcagcgtgtcaccaccacgccgggacgcctgatggtgtccgagttgctg
cccaagaccgccaagactccctttgatttggtcaacaagctgctgaccaagaaggaaatc
tccaacgtcatggatgcggtctaccggcactgtggtcaaaaggaatcggtgatcttcgcc
gacaagctgatggggctgggcttcaaacaggcctgcgtcgccggtatttcctttggcaag
gacgacctagtggttcccgacgagaaggaagtgctggtcggcgataccgagaccagcgtc
aaggagttcgagcagcagtatcaggacggcctgattacgcagggcgaaaagtacaacaag
gtggttgatgcctggtcccactgcaccgacgccgtggccgacgccatgatgaaggagatc
cagcgcgacaagaaaggcgagccggtaaactccgtttacatgatggcccactcaggggcc
cgtggttcgcccgcccagatgaagcagctggccgggatgcgcggactgatggccaagccg
gatggctcgatcatcgaaacgccgattatctcgaactttaaggaaggcctgaccgtgttg
gagtacttcaactccacccacggcgctcgtaaggggctggccgataccgccttgaagacg
gctaattccgggtacctcacccgccgtctggtggacgtggctcaggactgcatcatcacc
gagcacgattgcgggacggacaagtacctcaccgctcaggcgctcatcgaaggcggtgat
gtggtggttcccttggccgatcgtatcctgggtcgctccgcgtccgaggacatcatcaat
ccggaaaccggagaggtgatggtggcagcgggcgagttgatccacgaaaaagaagccgat
gccatcgaggctgtcggaatcgaaacggtgaaaatccggtcggtgctgacttgtaagtct
caggtcggtgtctgcggcacctgttatggtcgcgatctggcgcgtgggacgccggtgaac
atgggcgaggcggtcggtgtcatcgccgcccagtccattggcgagccaggtacccagctg
accatgcggaccttccacatcggcggggccgcgcagcggggcgccgaacaatcgaagatc
gaagcctcctatgacggtaaagtgaagttggaaaactgtaccaccgttaaagacagtgcc
ggtgtttcggtggtcatgagccggaatgcggaaatggtgctgaccgatgaaaccgggcgt
gaaaaggcccgtcaccgggtggcctacggtaccaagctggtcgtgggtgaaggtcaggat
gtggagcgcggtgacaagctcgccgaatgggatccctacaccttgccgatcatcaccgag
aaggatggtatcatcaacttcatggatatggtcgaaggcctgtccatgaccgaggtggtc
gatgaggcgaccggcctgtcatcgaaggtggtgactgactggaagcaacagccgcgcggt
tcggacttgaagccgcggattaccctgcgtgatgatgccggggaactcctgaccctggat
aatggcctggaggcccgctacttcatgtcggtggatgccattctgtcggtggagaacgga
caaaaggttcatgcgggcgacgtgctggcgcgtattccgcgtgaatcggccaagacccgt
gatatcaccggtggtctgccgcgggtggcggagctgtttgaggcccgtaaaccgaaggac
cacgcgatcatctcggacatcgacggtcgtgttgagttcggcaaggactataagaacaag
cgccgtatccttgtcgcgccggaagccgaggatgaggatccccgcgaatacctgatcccc
aagggcaaacatatctcggtgcaggaaggcgacttcgtgcggcggggcgatcccttgatg
gatggtaacccggtgccgcatgatatcctgcgggtgatgggggtcgaagccttggccgag
tacctcatcaacgaaatccaggacgtctatcgactccagggcgtgaaaatcaatgacaag
cacattgaggtgatcgttcgccaaatgctgcaaaaggtcgaagtcatggagcccggagac
accaccttcttggtgggcgaactggtggatcggatcgaattcgccgtggccaatcagaaa
gtggttgacgcgggcgagaagccggccgccgccgaaccggtgctacaaggcatcaccaag
gcatccttgcagacccactccttcatctctgccgcttccttccaggagaccaccagagtg
ctcacagaggcctcggtctctggcaaggaggataccctgctaggcctgaaggagaacgtc
atcgttggacgcctgatcccggccgggacgggaagcgtgatgaaccgcttccgtcaggtg
gctgccgaccgtgatcgcgaactggcggcacagcagcaagaagaggacgacgaactgtcg
ttgcccatcgggactcttcccgaagaagccgccgacgacgcctttgcgccgccgacggag
gagtaa
DBGET
integrated database retrieval system
