Marinovum algicola: MALG_00291
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Entry
MALG_00291 CDS
T03981
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
malg
Marinovum algicola
Pathway
malg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
malg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MALG_00291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
malg03400
]
MALG_00291
Enzymes [BR:
malg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MALG_00291
DNA repair and recombination proteins [BR:
malg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MALG_00291
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AKO95496
LinkDB
All DBs
Position
complement(299284..301728)
Genome browser
AA seq
814 aa
AA seq
DB search
MAETPDKLSDYIRKRDFSRTSEPRGGDAGRADGKPGFVVQKHDASRLHYDFRLEWQGVLL
SWAVTRGPSPDPGEKRLAVRTEDHPLDYAGFEGTIPKGEYGGGTVMLWDTGTWTPEGDVD
AGLEAGKLKFTLEGERMQGGWALVRMRGKENRENWLLIKERDDLAEDDPDALTRDFTTSV
TTGRSMEDIADGVERPAARKRTAKAPKFRDVQLATLYKAAPEGDDWLHEIKLDGYRTLAA
LGKGGTRFFTRSGKDWTGRYGALAEAFDPLPCDAALIDGEVMAARIEGSAFSSLQRALSE
GGPLVFIAFDLLSRDGTDLTGRPQDERREALAELLSGLPKDGALRMSEHVVGHGPEVFRQ
ACEGGAEGIVSKRRDAPYRGSRTKAWRKIKCSRRQEFVIGGYSPSDKPGRPFASLLIGSN
QDGRLRYRGRVGTGFAERDFERLEQAMKPRKTPPFDDVPREVARAAKWVTPALVAEVEFT
EFTGDGLVRHGSYLGLREDKAADEVQLETGKESDVETIVLNQTITSPDRQVFPEAGCSKL
DIARHYARVGKRMMALMSHRPLSLYRCPGGLEDACFFQKHGGSMPPAVARIEIEESDGKA
EDYLYATRPESLVAAAQMGTVEFHVWGARTDRLDRPDRLVFDLDPDEGLGWDAMRDAAFE
VRDRLHRLGLASGAIVTGGKGVHVWLPLRRSRGWDTVKLFAKTFAHVMAEKAPDRYTATM
SKSKRKGRIFIDWLRNERGATAIAPYSLRARQGAPVAVPVTWDELAELKSAKAFSLGDMG
RRMDRPCPAVALQDDLQSLSDGVIDKLNVWAEED
NT seq
2445 nt
NT seq
+upstream
nt +downstream
nt
atggccgagacccccgacaaactctccgattacatccgcaaacgcgatttctcccgcacc
agcgagcccaggggcggcgatgccggccgcgccgatggcaagcccggcttcgtggtgcag
aaacatgacgccagccggctgcattatgatttccggctggaatggcagggcgtgctgctg
agctgggcggtgaccagggggccgagccccgacccgggcgaaaaacgccttgcggtccgc
accgaggatcacccgctggactacgccggtttcgagggcaccattccaaagggcgaatat
ggcggcggcaccgtcatgctctgggacaccggcacctggacgccggagggcgacgtggat
gcggggctcgaagcgggcaaactgaaattcacccttgagggcgaacggatgcagggcggc
tgggctctggtgcggatgcgcggcaaggaaaaccgcgagaactggctgctgatcaaggag
cgcgacgatctggccgaagacgaccccgacgcgctgacccgcgacttcacgacctccgtc
accaccggacgcagcatggaggacatcgccgatggcgtcgaacgcccggccgcgcgcaaa
cgcacggccaaggccccgaaatttcgcgatgtgcagctcgccacgctctacaaggccgcg
cccgagggcgacgactggctgcacgaaatcaagctcgacggctatcgcacgctggccgcg
ttgggcaagggcggcacccggttcttcacccgctccggcaaggactggaccggccgctac
ggggcgctcgccgaggcctttgaccccctgccctgcgacgcggcgctgatcgacggcgag
gtgatggcggcgcggatcgaaggctctgccttttcctcgctgcaacgggcgttgtcggaa
ggcgggccgctggtcttcatcgccttcgacctgctgtcgcgcgatggcacggatctgacc
ggccggccgcaggacgaacgccgcgaggcgctggccgaactgctctcgggcctgccgaaa
gacggtgcgctgaggatgagcgaacacgtcgtcggccatggccccgaggtgttccggcag
gcttgcgaaggcggcgccgagggcattgtctcgaaacgccgcgacgcgccctatcgtggc
agccgcaccaaggcctggcgcaagatcaaatgttcgcgccggcaggaattcgtgatcggc
ggctacagcccttcggacaagccgggcaggccctttgcctcgctgctgatcggctccaac
caggacggcaggctgcgctatcgcggccgcgtcggcaccggttttgccgaacgggatttc
gagcggctggaacaggccatgaagccgcgcaagacgcccccctttgacgacgtgccgaga
gaggtcgcccgggccgccaaatgggtcaccccggcgctggtagccgaggtcgaattcacc
gagttcaccggcgacggccttgtccgtcacggcagctatctgggcctgcgagaggacaag
gcggccgacgaggtgcagctcgagaccggaaaggagagtgacgtggagacaattgtcctg
aaccagaccatcaccagccccgaccggcaggtctttcccgaggccggatgcagcaagctc
gacatcgcgcggcattacgcccgcgtcggcaagcggatgatggcgctgatgtcgcaccgg
ccgctgtcgctctaccgctgccccggcgggctggaggacgcctgtttctttcagaaacac
ggcggctcgatgccgccggcggtggcgcgcatcgagatcgaggaaagcgacggcaaggcc
gaggattacctttacgccacccgccccgagagccttgttgccgcggcccagatgggcacg
gtggaattccacgtctggggcgcgcgcaccgaccggcttgaccggcccgaccggctggtc
ttcgacctcgaccccgacgaggggctgggctgggacgcgatgcgcgacgccgccttcgag
gtgcgcgaccggctgcatcggctcgggctggcctcgggggcaatcgtcaccggtggcaag
ggcgtgcatgtctggctgccgttgcgacgtagccggggctgggacacggtcaagctcttt
gccaagacctttgcccatgtgatggccgaaaaggcgcccgaccgttataccgccacgatg
tcgaaatccaagcgcaagggccggatcttcatcgactggctgcgcaacgaacgcggcgcg
accgccatcgccccctattcgctgcgcgcgcgccagggcgcgcccgtggccgttccggtg
acatgggacgagctggcagagctgaagagcgcgaaagccttttcgctgggcgacatgggg
cggcgcatggaccggccctgccccgccgtggcgcttcaggacgatctgcaatcgctgagc
gatggcgtgatcgacaagctcaacgtctgggcggaggaggactga
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