KEGG   Marinovum algicola: MALG_00291Help
Entry
MALG_00291        CDS       T03981                                 

Definition
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
malg  Marinovum algicola
Pathway
malg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:malg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    MALG_00291
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:malg03400]
    MALG_00291
Enzymes [BR:malg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MALG_00291
DNA repair and recombination proteins [BR:malg03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     MALG_00291
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AKO95496
UniProt: A0A0H4KR85
LinkDB All DBs
Position
complement(299284..301728)
Genome map
AA seq 814 aa AA seqDB search
MAETPDKLSDYIRKRDFSRTSEPRGGDAGRADGKPGFVVQKHDASRLHYDFRLEWQGVLL
SWAVTRGPSPDPGEKRLAVRTEDHPLDYAGFEGTIPKGEYGGGTVMLWDTGTWTPEGDVD
AGLEAGKLKFTLEGERMQGGWALVRMRGKENRENWLLIKERDDLAEDDPDALTRDFTTSV
TTGRSMEDIADGVERPAARKRTAKAPKFRDVQLATLYKAAPEGDDWLHEIKLDGYRTLAA
LGKGGTRFFTRSGKDWTGRYGALAEAFDPLPCDAALIDGEVMAARIEGSAFSSLQRALSE
GGPLVFIAFDLLSRDGTDLTGRPQDERREALAELLSGLPKDGALRMSEHVVGHGPEVFRQ
ACEGGAEGIVSKRRDAPYRGSRTKAWRKIKCSRRQEFVIGGYSPSDKPGRPFASLLIGSN
QDGRLRYRGRVGTGFAERDFERLEQAMKPRKTPPFDDVPREVARAAKWVTPALVAEVEFT
EFTGDGLVRHGSYLGLREDKAADEVQLETGKESDVETIVLNQTITSPDRQVFPEAGCSKL
DIARHYARVGKRMMALMSHRPLSLYRCPGGLEDACFFQKHGGSMPPAVARIEIEESDGKA
EDYLYATRPESLVAAAQMGTVEFHVWGARTDRLDRPDRLVFDLDPDEGLGWDAMRDAAFE
VRDRLHRLGLASGAIVTGGKGVHVWLPLRRSRGWDTVKLFAKTFAHVMAEKAPDRYTATM
SKSKRKGRIFIDWLRNERGATAIAPYSLRARQGAPVAVPVTWDELAELKSAKAFSLGDMG
RRMDRPCPAVALQDDLQSLSDGVIDKLNVWAEED
NT seq 2445 nt NT seq  +upstreamnt  +downstreamnt
atggccgagacccccgacaaactctccgattacatccgcaaacgcgatttctcccgcacc
agcgagcccaggggcggcgatgccggccgcgccgatggcaagcccggcttcgtggtgcag
aaacatgacgccagccggctgcattatgatttccggctggaatggcagggcgtgctgctg
agctgggcggtgaccagggggccgagccccgacccgggcgaaaaacgccttgcggtccgc
accgaggatcacccgctggactacgccggtttcgagggcaccattccaaagggcgaatat
ggcggcggcaccgtcatgctctgggacaccggcacctggacgccggagggcgacgtggat
gcggggctcgaagcgggcaaactgaaattcacccttgagggcgaacggatgcagggcggc
tgggctctggtgcggatgcgcggcaaggaaaaccgcgagaactggctgctgatcaaggag
cgcgacgatctggccgaagacgaccccgacgcgctgacccgcgacttcacgacctccgtc
accaccggacgcagcatggaggacatcgccgatggcgtcgaacgcccggccgcgcgcaaa
cgcacggccaaggccccgaaatttcgcgatgtgcagctcgccacgctctacaaggccgcg
cccgagggcgacgactggctgcacgaaatcaagctcgacggctatcgcacgctggccgcg
ttgggcaagggcggcacccggttcttcacccgctccggcaaggactggaccggccgctac
ggggcgctcgccgaggcctttgaccccctgccctgcgacgcggcgctgatcgacggcgag
gtgatggcggcgcggatcgaaggctctgccttttcctcgctgcaacgggcgttgtcggaa
ggcgggccgctggtcttcatcgccttcgacctgctgtcgcgcgatggcacggatctgacc
ggccggccgcaggacgaacgccgcgaggcgctggccgaactgctctcgggcctgccgaaa
gacggtgcgctgaggatgagcgaacacgtcgtcggccatggccccgaggtgttccggcag
gcttgcgaaggcggcgccgagggcattgtctcgaaacgccgcgacgcgccctatcgtggc
agccgcaccaaggcctggcgcaagatcaaatgttcgcgccggcaggaattcgtgatcggc
ggctacagcccttcggacaagccgggcaggccctttgcctcgctgctgatcggctccaac
caggacggcaggctgcgctatcgcggccgcgtcggcaccggttttgccgaacgggatttc
gagcggctggaacaggccatgaagccgcgcaagacgcccccctttgacgacgtgccgaga
gaggtcgcccgggccgccaaatgggtcaccccggcgctggtagccgaggtcgaattcacc
gagttcaccggcgacggccttgtccgtcacggcagctatctgggcctgcgagaggacaag
gcggccgacgaggtgcagctcgagaccggaaaggagagtgacgtggagacaattgtcctg
aaccagaccatcaccagccccgaccggcaggtctttcccgaggccggatgcagcaagctc
gacatcgcgcggcattacgcccgcgtcggcaagcggatgatggcgctgatgtcgcaccgg
ccgctgtcgctctaccgctgccccggcgggctggaggacgcctgtttctttcagaaacac
ggcggctcgatgccgccggcggtggcgcgcatcgagatcgaggaaagcgacggcaaggcc
gaggattacctttacgccacccgccccgagagccttgttgccgcggcccagatgggcacg
gtggaattccacgtctggggcgcgcgcaccgaccggcttgaccggcccgaccggctggtc
ttcgacctcgaccccgacgaggggctgggctgggacgcgatgcgcgacgccgccttcgag
gtgcgcgaccggctgcatcggctcgggctggcctcgggggcaatcgtcaccggtggcaag
ggcgtgcatgtctggctgccgttgcgacgtagccggggctgggacacggtcaagctcttt
gccaagacctttgcccatgtgatggccgaaaaggcgcccgaccgttataccgccacgatg
tcgaaatccaagcgcaagggccggatcttcatcgactggctgcgcaacgaacgcggcgcg
accgccatcgccccctattcgctgcgcgcgcgccagggcgcgcccgtggccgttccggtg
acatgggacgagctggcagagctgaagagcgcgaaagccttttcgctgggcgacatgggg
cggcgcatggaccggccctgccccgccgtggcgcttcaggacgatctgcaatcgctgagc
gatggcgtgatcgacaagctcaacgtctgggcggaggaggactga

DBGET integrated database retrieval system