Flagellimonas marinaquae: LDL77_14210
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Entry
LDL77_14210 CDS
T07803
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
maqi
Flagellimonas marinaquae
Brite
KEGG Orthology (KO) [BR:
maqi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
maqi03009
]
LDL77_14210 (rlmD)
Enzymes [BR:
maqi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LDL77_14210 (rlmD)
Ribosome biogenesis [BR:
maqi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LDL77_14210 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
MTS
Met_10
Cons_hypoth95
Methyltransf_15
TRAM
PCMT
Methyltransf_11
N6_N4_Mtase
FtsJ
PrmA
UPF0020
Motif
Other DBs
NCBI-ProteinID:
UBZ13030
LinkDB
All DBs
Position
complement(3156755..3158167)
Genome browser
AA seq
470 aa
AA seq
DB search
MRKNRRRKTFENVEVIDAGAKGKSVGKAPDGRVIFLTNAVPGDIVDVMTTKKRKAYFEGV
ATNFHTLSDRRTEPVCQHFGTCGGCKWQHMGYEHQLYFKQKEVENNLKRIGNLELPDTTP
ILGSKEQYFYRNKMEFSFSDSRWLTQKEINSDEEIDDRNALGFHIPGMWDKILDIKKCHL
QQDPSNAIRLETKSFANKNGLTFFNPRKQEGLLRTLMIRTSSTGEIMVLIQFFEEDTKNR
ELLLNHLKETFPEITALLYVINSKGNDTIYDQDVICFAGRDHIFEEMEGLQFKINAKSFY
QTNSAQAYELYKVARDFAGLTGDELVYDLYTGTGTIAQFVSKKANKVIGVESVPEAIEDA
NANALHNNISNVDFYVGDMKNVFNDDFIAAHGQPDVIITDPPRDGMHKQVVEQLLQVAPP
KIVYVSCNSATQARDLALMKEQYKVTKVQPVDMFPQTHHVENVVLLEKRV
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaaaacagaaggagaaaaacgttcgaaaacgtagaggtaatcgatgccggagca
aaggggaaatctgtgggcaaggctcccgatggacgggtcatatttttgaccaatgccgta
cccggtgatatagtggacgtaatgaccacaaaaaaaagaaaagcctattttgagggtgtt
gccaccaatttccacaccctttcagatagaagaaccgaacccgtttgccaacattttggt
acctgtggcggatgcaaatggcaacacatgggctacgagcaccaactctattttaaacaa
aaagaggtggaaaacaacctaaagcgtattggcaacctagagttgccggacaccactcct
attctcgggtccaaggaacagtatttttacaggaacaaaatggagttctcgttttctgat
agccggtggttaacgcagaaagaaatcaattcggatgaggagatagatgacagaaatgct
ttgggcttccatattccaggtatgtgggacaaaattttggacattaaaaaatgtcaccta
caacaagacccttccaacgcgatacgattggaaacaaaaagttttgcgaacaaaaacgga
cttacattttttaatccaagaaagcaggaaggacttctacggactttgatgatacgtaca
tcatcaaccggggaaattatggtgctcatccaattctttgaagaggataccaaaaacagg
gaattactcttgaatcatttaaaggagacatttccggaaataaccgcactgctatacgta
atcaattccaagggcaatgataccatatacgaccaggatgtcatctgctttgcaggtcga
gaccatatttttgaggaaatggaggggcttcagtttaagataaatgcaaaatccttttac
cagaccaactctgctcaggcatatgagctttacaaggttgctagggattttgccggactc
actggagacgagctcgtatacgatttgtacacaggaacgggaaccatagcgcagtttgtc
tcgaaaaaagctaataaagtgatcggagttgaatccgtgcccgaagccattgaagatgcc
aacgccaatgctctgcacaacaacatctccaatgtggatttctatgttggtgatatgaaa
aatgtattcaacgatgattttatcgctgcacatggccaacccgatgttatcattaccgac
cctccaagggatgggatgcacaaacaagtagttgaacaactgctccaagtggcacctcca
aaaattgtttacgtaagctgcaacagcgcaacccaggccagggatttggctcttatgaaa
gaacaatacaaggtcaccaaggttcaacccgtggatatgttcccacagacgcaccatgtt
gaaaatgttgtacttttggaaaaacgggtataa
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