Maribacter cobaltidurans: CJ263_19990
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Entry
CJ263_19990 CDS
T05023
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
marb
Maribacter cobaltidurans
Pathway
marb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CJ263_19990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marb03019
]
CJ263_19990
03400 DNA repair and recombination proteins [BR:
marb03400
]
CJ263_19990
Enzymes [BR:
marb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CJ263_19990
Messenger RNA biogenesis [BR:
marb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CJ263_19990
DNA repair and recombination proteins [BR:
marb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CJ263_19990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ASV32322
UniProt:
A0A223VAK8
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All DBs
Position
4438126..4440024
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AA seq
632 aa
AA seq
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MSTEPHRILQQYWGYPNFKGSQEVIINAALKGQDVLALLPTGGGKSICFQVPAMAQEGIC
IVVSPLISLIQNQVAQLKNLGIKAIGMTGGLKFVEVNDLLDNCIYGNYKFIYLSPERLEQ
EIIRDRIRQMNVNFLVVDEAHCISQWGHDFRPAYLKCQILRELQPDAPMLALTATATPKV
TQDIIEHLQLLNPLVQKDSFSRSNIAFQVHYNEDKSHQLLHYCKQLRSSGIVYTRSRKVT
KELSSYLIKNGISSTFYHGGIPEKDKKDKLEKWLKNDITIIVATNAFGMGIDKPDVELVV
HYQIPDCIENYFQEAGRAGRNGEKAQAILLTNKTDIELGKKQFLSVLPDVSFVKYIYNKL
NNYFQIAYGEGSNEKYRLNFNEFCSVYQLNSLLSYNVLKILDRNSVIALSESFHRMTGIQ
FISSKENIMTYLSRNTFLDDLVKLILRTYGGIFENETHINTFTLAQKLNYPEKKVLDYLE
ILEKDEIVDYKASHSDLELTFLVPREDGHTINRFARNITEQNELKKFQVDAILGYINNNK
ICRSKQLLHYFGEKSSKDCGICDVCVNDTSNREELSDLKEQIISLLRKQTASSKKMQSAL
GCSSNDLVFILKELLEEGSITLNLKNEYKIVV
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
gtgagtaccgaaccacatagaatcctacaacaatattggggttatccaaattttaagggc
tcccaggaagttattattaatgcagcactaaagggacaagatgttctggcactattacct
acaggaggaggcaaatccatatgtttccaagttcctgctatggctcaggagggaatttgt
attgtggtttccccactgatttccctaatccagaatcaggttgcccaactaaagaacctt
ggcatcaaggcaataggaatgactggagggctgaaatttgtggaggtcaacgacctactg
gacaattgtatttatgggaactataagtttatttacctctcaccggaacgtttggaacaa
gaaattatccgcgaccggatacgccaaatgaacgttaattttctggtcgtagatgaggcc
cattgtatttcccaatggggccatgattttcgtcctgcatatctcaagtgtcaaatatta
agggaactacagccggatgcacccatgctggcattgacggcaactgcaaccccaaaagtc
acccaggatattatagaacacttgcaattattaaatccattggtgcaaaaagactccttt
tccaggagcaacatcgctttccaagtccattataatgaagataagagccatcaactatta
cattattgcaaacaacttagaagtagtggaattgtttacacccgatccagaaaggttacg
aaggaactaagctcctatctaatcaagaatggtatctcctccacattttaccatggtggt
atacccgaaaaagacaaaaaggacaagttggaaaaatggcttaaaaatgacattacgatc
atagtggccacaaatgcctttggcatgggcatcgacaagccagatgttgaattggtggtg
cactatcaaattccggactgtattgaaaattattttcaggaggccggaagagctggtaga
aatggtgaaaaggcccaagctatactgctaactaacaaaaccgatatagaactgggaaag
aaacagtttttaagcgtattgccggatgtttccttcgtcaagtacatttataacaaattg
aacaattattttcaaattgcctatggagagggaagcaacgaaaaatatcggctcaatttc
aatgaattctgttccgtctatcagttaaactccctattgagttataatgtgttgaaaatt
ttggacaggaattcagtcattgcgctatcggaatcctttcatagaatgaccggcatacaa
tttatttcttccaaggaaaatatcatgacttatttgagcagaaatacttttttagatgat
ttggtcaaattgatactaaggacatacggtggcatctttgaaaatgaaacccacatcaat
acctttacccttgcacaaaaattgaactatccggaaaaaaaagtacttgattacttggag
attttagagaaggatgaaattgtagattacaaggcatcccacagcgaccttgaacttact
tttttggtacctcgggaggatggccataccattaataggtttgcaaggaacattaccgag
caaaatgaactgaaaaaatttcaagttgatgccattctaggatatatcaataacaataaa
atttgtagaagtaaacagttattgcactactttggggagaagtcttccaaggactgcgga
atctgcgatgtttgtgtgaacgatacatcaaatagggaagagttatctgaccttaaagaa
caaatcatttcccttttaagaaaacagacagcctcttccaaaaaaatgcaaagtgcccta
ggttgttcctccaatgatttggttttcatcctaaaggagcttctagaagaaggtagcatt
accttaaatttaaagaatgagtataaaattgtagtatga
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