Methanogenic archaeon ISO4-H5: AR505_1321
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Entry
AR505_1321 CDS
T04272
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
marc
Methanogenic archaeon ISO4-H5
Pathway
marc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
marc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AR505_1321
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
marc03019
]
AR505_1321
03009 Ribosome biogenesis [BR:
marc03009
]
AR505_1321
Enzymes [BR:
marc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AR505_1321
Messenger RNA biogenesis [BR:
marc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AR505_1321
Ribosome biogenesis [BR:
marc03009
]
Prokaryotic type
rRNA helicases
AR505_1321
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AMH95036
UniProt:
A0A110A307
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All DBs
Position
1410923..1412701
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AA seq
592 aa
AA seq
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MTQSRFEDLGISKDVLKAVRSIGWSAPTPVQAAAIPVGLEGADLLAQAQTGTGKTGTFGS
IILSRTKSGSSDPTSLVLVPTRELASQVSEEMERLSEYSGHVCIPIYGGVNIETQAKQLK
KGADAVIATPGRLKDLIERKMIKLDSVEIVVLDEADRMLDMGFAPSVNMILSRITKDRQT
MMFSATMPEEVMKMAVKHMYDHKEILVSKDEPTLDLTEQFYIMTNRDSKRDELVHLIEDG
YPKMMVFCRTKRKVDYLTRKLKRDEYNVEGIHGDIGQNKRERVIKDFAGDKLQVLIASDV
ASRGLDIDGVDVVVNYDIPVDPETYIHRIGRTGRAGKTGKAITFVTSDDIKGLNSIEKTV
AKKITELPWTSSLYTEDPSAEPVPKAAKAPKKQQQKKEAPKKAEPKKQVPKKEKEPDTPV
KGERTLRGKLDKGVRRDAQPKAEKPAAKPKTEPAPKTKVPERHKTEKKEILPEAPPAPQN
NGRYVPLGVPKNPHPLHAYVGIVRAAHPKKDMSFDRLELNVGSDDGLDVDKLRHFVIKTA
GVDSKDVGNIHIMDNKARVQVVRYRSQEVVDELFGQVINGKRVLVTNLSDKH
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaagcagatttgaggatctaggcatttcaaaagacgttttgaaagccgtcaga
tccattggatggtcagcgcccaccccggtgcaggcagccgctatccccgtcggactggaa
ggagcagatctccttgcccaggcacagaccgggaccggaaagaccgggaccttcgggtca
atcatcctaagcaggaccaagtcgggatccagcgacccgacttcactggttctcgtgccg
acaagggagctcgcttcgcaggtgtccgaggaaatggaaagactctcggaatacagcggg
catgtctgcatccccatctacggcggcgttaacatcgagacccaggcgaaacagcttaag
aaaggggcagatgcagtgattgccacccccggaagactcaaggacctcatcgagaggaag
atgatcaagctcgactctgtcgagatcgtcgtccttgacgaggccgaccgcatgctggac
atgggattcgcccccagcgtgaacatgatcctctccaggatcaccaaggacagacagacc
atgatgttctcggccaccatgcccgaagaagtcatgaagatggctgtcaaacacatgtac
gaccacaaggagattctggtctccaaggacgagcccaccctggacctcacggaacagttc
tacatcatgaccaaccgcgactccaagagggacgagctcgtgcacctgatcgaggacgga
taccccaaaatgatggtattctgcaggaccaaacgcaaggtggactacctcacccgcaaa
ctgaagagggacgagtacaacgtggaaggcatccacggcgacatcggccagaacaagagg
gagagggtcatcaaggatttcgccggtgacaaactccaggtcctcatcgccagcgatgtg
gcctcccgcggactggacatcgacggcgtggacgtcgtcgtcaactacgatatccccgtc
gaccccgagacctacatccacaggatcggaaggaccggcagggccggcaagaccggaaag
gcgatcaccttcgtcacctccgacgacatcaaaggtctgaatagcatcgagaagaccgtt
gccaagaagataaccgagctcccctggacctcctcgctctacaccgaggatccttctgcg
gaacctgtccctaaggcggccaaggcccccaagaagcagcagcagaagaaagaggcaccc
aagaaggccgagcctaagaagcaggtgccgaagaaggaaaaggagccggatactcccgtc
aaaggagagcgcaccctccgcggaaagctggataagggcgtccgcagggatgctcagccc
aaggcggagaagcccgccgccaaacccaagacggaacccgcgcccaagaccaaagtcccg
gaacgccacaagaccgagaagaaggagatcctccccgaggctcctcccgcacctcagaac
aacggcaggtatgtccccctgggcgttcccaagaacccacacccgctccatgcctatgtc
ggcatcgtgcgcgcggcgcaccccaagaaggacatgtccttcgaccgtctggaactcaat
gtcggatccgatgacggcctcgacgtcgacaagctcaggcactttgtcatcaaaaccgca
ggtgtcgattcgaaggacgtcggcaacatccacatcatggataacaaggccagggtgcag
gtcgtcagatacaggtcccaggaggtcgtcgacgagctcttcggacaggtcatcaacggc
aagcgcgtgctggtcacaaaccttagcgacaaacactga
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