Massilia sp. WG5: AM586_00085
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Entry
AM586_00085 CDS
T04122
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
masw
Massilia sp. WG5
Brite
KEGG Orthology (KO) [BR:
masw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
masw03016
]
AM586_00085
Enzymes [BR:
masw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
AM586_00085
Transfer RNA biogenesis [BR:
masw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
AM586_00085
Prokaryotic type
tRNA splicing ligases
AM586_00085
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
ALK94921
LinkDB
All DBs
Position
complement(3188523..3189758)
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AA seq
411 aa
AA seq
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MEPRDYEQMNPPGGHPVKMWTRGVPVEAEAKEQLARLARMPFIYRHVAVMPDVHVGKGST
IGSVIPTLGAVIPAAVGVDIGCGMMAAKTTLRAADLPDNLARLRSAIEEAIPHGMSPKTR
SRKGRDVGSWNNPPPPVDAGWARLKDAFDQICRKWPKLRNTNNYKHLGTLGSGNHFVEIC
LDEEGFVWLMLHSGSRGVGNAIGTHFIELARQDMRKHMINLPDQDLAYLEEGTRHYEDYV
EAVGWAQKFARINREVMMHNLVRAVRSVIPKPFETHVEAVNCHHNYVQQERHFGKDVLVT
RKGAVSAREGELGIIPGSMGARSYIVRGKGNPESFHSCSHGAGRTMSRTEAKRRFTVQDA
YEATVGVECRKDEGVIDEIPMAYKDIEAVMQAQSELVEVVHTLKQVVCVKG
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggaaccccgagattacgagcagatgaatccgcccggcgggcacccggtcaagatgtgg
accaggggcgtgccggtcgaagcggaagcgaaggagcaactggccaggctggcgcgcatg
cccttcatttaccgccacgtcgcagtgatgcccgacgtccacgtcggcaagggctcgacc
atcggcagcgtgatcccgaccctgggcgcggtgatcccggccgcggtcggcgtcgacatc
ggctgcggcatgatggccgccaagaccacgctgcgcgccgcggacctgcccgacaatctg
gccaggctgcgcagcgccatcgaggaagcgatcccgcacggcatgtcgcccaagacccga
agccgtaaaggacgcgacgtcggttcctggaacaatccgccgccgcccgtcgatgccggc
tgggccaggctgaaggacgcattcgaccagatctgccgcaaatggccgaagctgcgcaac
acgaacaactacaagcacctcggcaccctcggcagcggcaatcacttcgtcgagatctgc
ctcgacgaggaaggcttcgtctggctgatgctgcattccggctcgcgcggggtcggcaat
gcgatcggcacccacttcatcgaactggccaggcaggacatgcgcaagcacatgatcaac
ctgcccgaccaggacctggcctatctcgaggaaggcacccggcactacgaggactacgtg
gaagcggtcggctgggcccagaagttcgcacgcatcaaccgcgaagtcatgatgcacaac
ctggtgcgcgcggtgcgcagcgtgatcccgaaacccttcgagacccatgtcgaagccgtc
aactgccaccacaactacgtgcagcaggagcgccacttcggcaaggacgtgctggtcacg
cgcaagggcgcggtgtcggcgcgcgagggcgagctcggcatcatcccgggctcgatgggc
gcgcgcagctacatcgtgcgcggcaaaggcaatcccgagagttttcatagctgcagccac
ggcgccggtcgcaccatgagccgcaccgaggccaagcgccgcttcacggtgcaggacgca
tacgaagccaccgtcggcgtcgaatgccgcaaggacgaaggcgtgatcgacgagatcccg
atggcctacaaggatatcgaagccgtcatgcaggcccagagcgagctggtggaagtcgtg
cacacgctcaagcaggtggtctgcgtgaagggttga
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