Massilia sp. YMA4: DPH57_12450
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Entry
DPH57_12450 CDS
T05528
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
masy
Massilia sp. YMA4
Pathway
masy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
masy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
DPH57_12450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
masy03400
]
DPH57_12450
Enzymes [BR:
masy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
DPH57_12450
DNA repair and recombination proteins [BR:
masy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
DPH57_12450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AXA91883
UniProt:
A0A7U5XYU8
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All DBs
Position
2921702..2923060
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AA seq
452 aa
AA seq
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MTINSPDPAFEQPAVITVSALNQAVGRLLERSFPLTWIAGEISNFTRASSGHWYFTLKDD
AAQVRAVMFRGRAQYAGFVPREGDKVEVRALVTLYGPRGDYQINVEAIRRAGVGALFEAF
MRLKEKLAAAGLFDEARKRPLPLFPRTIGIVTSPQAAALRDVLTALRRRAPHVRVVLYPT
LVQGQLAAARIAEAIDTASRRAECDVLLVCRGGGSIEDLWCFNEEAVAYAIANCRMPVIS
GVGHETDFTIADFAADLRAATPTAAAELAATPRGDWLASLRADAADLRRALRRTLDDAAQ
TLDNHARRLQSPSARIRQQRLQLLALSTAMMHANRAPLNASRHGLERLAGRLAARRPDTR
PVRAHLAALQHRCTVNIGNGLAQRREALQALAAQLELLNPQRTLERGYAIVTNEKGAILR
SPGQIQPRGTLTVRLAEGSAQVQVAGVQATLE
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcaacagccccgatcccgcattcgaacagcccgccgtcatcacggtcagtgcc
ctcaaccaggccgttggccgcctgctggagcgctcgttcccgctgacgtggatcgcgggc
gagatctccaactttacacgcgccagctccggtcattggtacttcaccttgaaggacgac
gcggcccaggtgcgcgccgtgatgttccgcggccgcgcccagtacgccggcttcgtgccg
cgcgaaggcgacaaggtcgaggtgcgcgccctggtcacgctgtacggcccgcgcggcgac
taccagatcaatgtggaagccatccgccgtgccggcgtgggcgcgctgttcgaagccttc
atgcgcctgaaggaaaagctggcggcggccggcctgttcgacgaggcgcgcaagcgtccc
ctgcccctgttcccgcgcaccatcggcatcgtcaccagcccccaggcggcggcgctgcgc
gacgtgctgacggcgctgcgccggcgcgcgccgcacgtgcgcgtcgtcttgtatccgaca
ctggtgcagggtcagctggcggcggcgcgcatcgccgaggccatcgacacggcctcgcgc
cgggccgagtgcgacgtgctgctggtctgccgcggcggcggcagcatcgaggacctgtgg
tgcttcaacgaggaagcggtggcgtacgccatcgccaactgccgcatgccggtgatttcc
ggcgtcggccacgagaccgacttcacgatcgccgacttcgccgccgacctgcgcgcggcc
acgcccacggcggccgccgaactggccgccacgccgcgcggcgactggctggcctcgctg
cgggcggacgcggccgacctgcggcgcgcgctgcgccgcacgctggacgacgccgcacag
actctggacaaccacgcgcgccgtctgcagagtccgtcggcccgcatccgccagcagcgc
ctgcaactgctggcgctgtccaccgccatgatgcacgccaaccgcgcgccgctgaacgcg
tcgcgccacggcctcgagcggctggccggccggctggcggcgcgccgtcccgacacccgt
cccgtgcgcgcccacctggccgcgctgcagcatcgctgcacggtcaatatcggcaacggc
ctggcgcagcggcgcgaggcactgcaggcgctggccgcgcagctcgagctgctcaatccg
cagcgcaccctggaacggggctatgcgatcgtcaccaacgagaagggggcgatcctgcgc
tcgccaggccagatccagccgcgcgggacgttgacggtgcggctggccgagggcagcgcg
caggtgcaggtggctggcgtgcaggccacgctggaataa
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