Macrococcus brunensis: MGG13_03380
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Entry
MGG13_03380 CDS
T08179
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mbru
Macrococcus brunensis
Pathway
mbru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mbru00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MGG13_03380 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mbru03019
]
MGG13_03380 (rnr)
03016 Transfer RNA biogenesis [BR:
mbru03016
]
MGG13_03380 (rnr)
Enzymes [BR:
mbru01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
MGG13_03380 (rnr)
Messenger RNA biogenesis [BR:
mbru03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MGG13_03380 (rnr)
Transfer RNA biogenesis [BR:
mbru03016
]
Prokaryotic type
tRNA degradation factors
MGG13_03380 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HEPN_Swt1
Rho_RNA_bind
POTRA_3
Motif
Other DBs
NCBI-ProteinID:
ULG74819
LinkDB
All DBs
Position
629914..632223
Genome browser
AA seq
769 aa
AA seq
DB search
MTQTDILNILQTRKGETLAISDIEQALALSNADEFKELVKMLVELEQKGKIKRTKEDRYM
LIDSEYVEGIVSQNKKGFAFVRPTTEGIEDIFIPPNAINQAMDGDTVLVKVSKGRDGREE
GVIKEITNRAITTVVGTYTEAKHFGFVLPDDKRITQDIFIPKKRNLGAVEGHKVLVELTA
YPDGNSNPEGHVTAILGHKNDPGVDILSIIYQHGINIDFAPDAIKEAERVPDAISPQDIK
GRRDLRDKLTITIDGADAKDLDDAISLERKGENYLLTVSIADVSHYVTEGSALDREAYER
GTSVYLVDRVIPMIPHRLSNGICSLNPQVDRLTMSCEMEITPQGEIINHDIFQSAIYSDE
RMTYSDVNEILDGDKELREKYAHIVPMIEDAQELNTILAAMRKRRGEVDFDFKEAKILVN
EDGVPFDVAIRERGKGERLIESFMLAANETIAEHFHHMKVPFIYRIHEEPKADKIKRFFE
FIANFGIMVRGGTENIHPKTLQTIAKEIKGKPEEMVISTLMLRSMQQAKYSEQSLGHFGL
SAQYYTHFTSPIRRYPDLIVHRLIRKYLIEKSMDDAAQDKWEDLLVEISDHTSKRERRAV
DAERDTDDLKKAEYMLQHVGEEFEGIISSVANFGMFVELENTIEGMVHNTNMTDDYYHFD
ERQMALIGERGGKVFRIGDKVKIKVLSVNIDERMIDFSIVGMEPRQVERKSRGTVIRTEK
KAGRDDNRKPRGKGRGKGRNNRSGSSNNGNKKPFYKAKAVKNAGRGKKK
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaacagatattttaaacattttacaaacaagaaaaggcgagacacttgcaatc
agcgatatcgagcaggcgcttgcgctttctaatgcagatgaattcaaggaactcgtcaag
atgctcgttgaactagaacaaaaaggaaaaattaaacggacgaaagaagatcgttatatg
ctgattgactctgagtatgttgaggggattgtcagtcagaataaaaaaggttttgctttt
gtgcgtccgacaactgaaggaattgaagatatttttattccacccaatgcgatcaatcag
gcaatggacggggatacggtacttgtcaaagtttctaaagggcgtgacggccgtgaagaa
ggcgttatcaaggaaattaccaaccgcgcgattacgactgtagtaggtacgtatacggaa
gcaaagcacttcggttttgtactgccggacgataaacggattacacaggatatcttcatt
ccgaagaaacgtaacttaggcgcggttgaagggcataaagtactggtcgaactgactgct
taccctgacggcaacagtaatcctgaaggacatgtcactgcaatcctgggacataaaaat
gacccgggcgtcgatattctgtccatcatctatcagcacggaatcaatatagatttcgca
ccagatgccattaaggaagcagaacgtgtgccggacgctattagtcctcaagatatcaag
ggacgcagagatttaagagataaactgacaattacgatagacggcgctgacgcaaaagat
ttagatgatgccatcagccttgaacggaaaggtgagaactatcttctgacagtcagtatt
gctgatgtcagtcattatgtgacagaaggttctgcactggacagagaagcttatgagcgt
ggtactagtgtctatttagtggaccgcgtgattccgatgattccgcatcgcctgtcgaac
ggtatctgttcacttaatccgcaggtcgatcgtctgacgatgagctgtgagatggagatt
acgccgcaaggtgaaatcattaaccatgacatattccaaagtgccatctattcagatgaa
cgtatgacttacagtgatgtcaacgagattctggatggagataaagaactgcgagagaaa
tatgctcatattgttccgatgattgaagatgcacaggaactgaatacgattctagctgcc
atgcgtaagcgccgcggtgaagttgacttcgatttcaaggaagcgaagattctggtcaat
gaagacggtgtgccatttgatgtagcgattcgtgaacgcggcaaaggtgaacgtctgatt
gagtcgttcatgctggcagcaaacgaaacgattgctgaacacttccatcatatgaaagtt
ccttttatctaccgtatacacgaagagccgaaagcggataaaattaaacgtttcttcgag
ttcatcgcgaatttcggtatcatggtgcggggtggtacagagaacattcatccgaaaaca
ctccagaccattgctaaagaaatcaaaggaaagccagaggaaatggtgatttcaacgctg
atgcttcgcagcatgcagcaggcgaagtattctgagcagtctctcggccacttcggtctg
tcagcccagtattatacccatttcacatcgccgatccgtcgttatcctgacttgatcgta
catcgtctgattcgtaaatatctcattgaaaaatcaatggacgatgctgcacaggataag
tgggaagatctgcttgtcgaaatcagtgatcacacgtctaaacgtgaacgtcgtgcagta
gatgcagaacgtgatacagatgatctcaaaaaagcggaatatatgctgcagcatgtcggc
gaggaattcgaaggcatcatctcatcagttgcgaacttcggaatgttcgtggaactcgag
aataccattgaaggtatggttcataatacgaacatgactgatgactattatcacttcgat
gaacgccagatggcattaatcggagaacgtggtggtaaagtcttccgtattggcgataaa
gtgaaaattaaagtgctcagtgtcaatattgatgagcgcatgattgacttcagcatcgtc
ggaatggaaccaagacaggttgaacgtaaatcacgcggtacagttatacgcactgagaaa
aaagctggtcgtgatgacaaccgtaaacctcgtggcaaaggacgaggtaaaggaagaaat
aacagaagcggcagcagtaataatggtaataaaaaaccattctacaaagcgaaagctgta
aaaaatgcaggacgtggcaagaagaaatag
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