Methylococcus capsulatus: MCA1995
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Entry
MCA1995 CDS
T00205
Symbol
holB
Name
(GenBank) DNA polymerase III, delta prime subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
mca
Methylococcus capsulatus
Pathway
mca03030
DNA replication
mca03430
Mismatch repair
mca03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MCA1995 (holB)
03430 Mismatch repair
MCA1995 (holB)
03440 Homologous recombination
MCA1995 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mca03032
]
MCA1995 (holB)
03400 DNA repair and recombination proteins [BR:
mca03400
]
MCA1995 (holB)
Enzymes [BR:
mca01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
MCA1995 (holB)
DNA replication proteins [BR:
mca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
MCA1995 (holB)
DNA repair and recombination proteins [BR:
mca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
MCA1995 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
AAA_16
AAA
Motif
Other DBs
NCBI-ProteinID:
AAU91792
UniProt:
Q606M1
LinkDB
All DBs
Position
complement(2144583..2145590)
Genome browser
AA seq
335 aa
AA seq
DB search
MSDPIGRYPWLAPARRRLRAYLEAGRLPQGLLISGAAGVGKGVLADDFARRLLCASPPAE
GACGTCHACRLVVAGNHPDYLHIEPEEAGKRITVELVRRLIDRLSLKPQYGASRVVVIRP
AHAMNMAAANSLLKTLEEPDPHTLFLLISERPAQLPATVLSRCQRLDVRLPEREEALRWL
RGQGVGEEAEALLAMAGGAPVRAVELHGGGDLAQRRRMLFDDWVAVLRDESDPLAVAERW
AKEDGETVLIWLRGWIADLIRISSTEASVPLRLANADLEPGLRKAAAGLDLRALFACLDG
VDAARRNLEGQANRQLVMEEILINWNRSRPRGARH
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaccccatcggtcgttatccgtggctggcaccggcacgccgccggttgagggcg
tatctggaggcgggacgtttgccgcagggcttgctgatttcgggcgccgccggcgtgggg
aagggagtgctggccgacgatttcgcccgccggctcctgtgcgccagcccgccggccgag
ggggcgtgcggtacctgccatgcctgtcgtctggtggtggcgggtaatcatccggactat
cttcacatcgaaccggaggaagccggtaaacgtatcaccgtcgagttggttcgccggctc
atcgacagactttcgctcaagccgcaatatggcgcttcccgggtcgtggtcatccgtccg
gcacatgccatgaacatggcggccgcgaacagtctgttgaaaacgctggaagaacccgac
ccgcatacgcttttcctcctcatcagcgagcgacccgcgcaactgccggcgacggtgctc
agtcgctgccagcggctggatgtgaggctgccggagcgggaagaagcgttgcgctggctg
cgtggacagggagtcggggaagaggcagaggccttgctggcgatggcgggtggtgcaccg
gtgcgagcggtcgaactgcatggggggggcgatctggcgcagcgcagaagaatgctcttc
gatgactgggtggccgtgctgagggacgagagcgatccgctcgcggtggcagagcgttgg
gccaaggaggacggcgagaccgtcctgatttggttgcgcggctggatcgcggacctcatc
cgtatcagtagcactgaagcatcggttccgttgcgcctggccaacgccgatctggaaccg
ggattgcggaaagcggcggcgggcctggatctccgcgccctgttcgcctgcctcgacggt
gttgatgcggcccgccgcaatctggagggccaggccaaccggcagctggtcatggaagag
atcctgataaactggaaccggtcgagaccacggggggcgaggcattga
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