Microbulbifer celer: LPW13_05395
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Entry
LPW13_05395 CDS
T07789
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mcel
Microbulbifer celer
Brite
KEGG Orthology (KO) [BR:
mcel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mcel03016
]
LPW13_05395
Enzymes [BR:
mcel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPW13_05395
Transfer RNA biogenesis [BR:
mcel03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LPW13_05395
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
Rrp44_S1
BssS
Motif
Other DBs
NCBI-ProteinID:
UFN58479
LinkDB
All DBs
Position
complement(1325338..1327293)
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AA seq
651 aa
AA seq
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MLNADALKQLTQLKTDIRSTKEYAEGRVRGSSGKFGFVVLDDGREAFLPPAEMDRVFPGD
RVRVSLNDEDKGKLSAELDSLIDSELKYLVGQYVQRGQGHFIQPSQPGLSRWIFLPPKAR
GKAQPGEFIACSVTRHPFKDGRSQAKVERVIGKPEMPGIEHAFVVAQYQLPDQFSKEALA
QAEDIPAQLETLCAERKDMSDLGFVTIDAETTKDMDDALAVTESDSGWTLHIAVADPASL
IEPGSALDKDARQRANSVYLTGETLPMLPASLCENSFSLLANELRPALVMHIEVGKDGTL
NGFEYEFAAVRSQHKLSYAQVARFIDGDESAVPVEQHASLRHLDALSKARAEYRAGHSLV
MEDRPDYALILNAQRKIERIEKQERTTAQRMVEEAMLATNICAGKKLAELGAGCFSIHLG
FRDERMAEVRALLKETLPEFTELDLLDLDNYLKLVKHLESHSEPAMQNVLAVLKRMLRPG
ELSHTAAAHLGLGLTHYATVTSPIRKFNDLHNHRVLRAALEGEGANLPSLDASSSESLQQ
RVATGRQADRALQQWLYCQFLENRIGETHTGKITLVNGAGIGVRLEEYGVNGFVRFNSKK
QPFEFDGKHLRITRGEESFQLEQDVQVKISAVDTDKRRIAFELVTEATPAA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgctcaatgccgatgctctcaagcagctgacacaactgaaaaccgacatccgctccacc
aaggagtatgctgaaggacgggtacgcggcagcagcggcaagtttgggtttgtggtgcta
gatgacggtcgcgaagcgttcctgccaccggctgaaatggatcgcgtgttccccggcgac
cgggtgcgggtgagcctgaatgacgaagacaaaggaaagctctccgcagaactggacagc
ttgatcgacagcgagctgaagtatctggtcggccagtacgttcagcgcggacagggccat
ttcatccaacccagccaaccgggtctgtcccgctggatatttctgccgcccaaggcgcgc
ggtaaagcccagcccggtgagttcatcgcctgtagtgtcacacgccatccctttaaagac
ggtcgatcccaggcgaaggtagaacgcgttatcggcaaaccggaaatgcccggtatcgag
cacgcttttgtggtggcccagtaccagctcccggaccagttcagtaaagaagcgctggca
caggcagaagatattcccgcacaactggaaacactctgcgctgagcgcaaagatatgtcc
gacctgggctttgtcaccatcgacgccgaaaccaccaaagatatggacgatgccctggcg
gtcaccgaatccgacagcggctggaccctgcacattgccgttgccgatcccgccagcctg
attgaacctggcagcgctctggacaaagacgcacgccagcgcgccaatagtgtctacctg
accggcgaaaccctgcctatgctgcccgccagcctgtgtgaaaacagcttctccctgctg
gcgaatgaactgcgcccggccctggtgatgcatattgaggtgggtaaagacggaacgctg
aatggctttgaatacgaatttgccgctgtccgttcccagcacaagctgagctatgcccag
gttgcccggtttatcgacggtgacgaatccgctgtgccggtggagcagcacgccagcctg
cgccacctggatgcattgagcaaagcccgcgccgagtaccgcgcaggccactctctggtg
atggaagatcgcccggactacgcgctgattctgaacgcccagcgcaaaatcgagcgcatc
gaaaagcaggagcgcaccaccgcccagcgcatggtggaagaagccatgctcgcgaccaat
atctgcgccggcaagaagctggcggaactcggtgcagggtgcttctccatccatctcggt
ttccgcgacgaacgcatggcggaggtccgcgcgctactgaaagaaaccctgccggagttt
accgagctggacctgctggatctggataattacctcaaactggtaaaacacctggaatcc
cactctgagccggccatgcagaatgtactcgcagtactcaagcgcatgctccgccccggc
gagctgagccacacggctgctgcgcacctgggactcggccttacccattacgccacggtc
acctcgccgatccgcaaattcaacgatttgcacaaccaccgtgttctgcgtgccgccctt
gaaggtgaaggcgcaaacctcccatcactcgacgccagcagtagcgaatccctgcaacag
cgggtcgccaccggccgccaggcggatcgcgcactgcaacaatggctgtactgccagttt
ctggaaaacagaattggcgagacccataccggaaaaatcaccctggtaaatggtgccggc
atcggtgtgcgcctggaagagtacggcgtcaacggttttgtgcgcttcaatagcaaaaag
cagccgtttgaatttgatggcaagcacctgcgtatcacccgcggtgaggagtccttccag
ctggaacaggacgttcaggtgaaaatcagtgcggtcgataccgacaagcgccgtatcgcc
tttgaactggtcactgaagccacacccgcggcgtaa
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