Mugil cephalus (flathead mullet): 125018748
Help
Entry
125018748 CDS
T08342
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
mcep
Mugil cephalus (flathead mullet)
Brite
KEGG Orthology (KO) [BR:
mcep00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
mcep00536
]
125018748 (col13a1)
Glycosaminoglycan binding proteins [BR:
mcep00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125018748 (col13a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125018748
NCBI-ProteinID:
XP_047458916
LinkDB
All DBs
Position
13:complement(24984069..25079118)
Genome browser
AA seq
757 aa
AA seq
DB search
MEEGLQRGVIGKPGEERRTCGEQQEQPSKQPPWRNWKDLSGLTICIAVAVLCLGGCIVVF
VRTSELHSRIVSLEQQRDAQLSGWMLSLEQVEPVILGRLDQILEEKLAARLPKTREQREA
PHSCLCPPGPPGPPGRAGFPGDKGSMGIPGRMGLKGHAGEKGAPGEPGLSIIGPRGPPGQ
PGTRGFPGFPGPIGLDGKPGQNGLKGDMGQRGPKGFPGEPGPKGEKGVCGDYTHRGLFVQ
DLPLKTLAAMRSSQALTLKMLPITVRNMPSISPLILKRLKQGEPGAQGPPGPPGPPGLPG
SPGLDGASGSPGKPGEPGKPGKDPRLLPGLKGEPGVPGQKGDRGDVGPPGPEGPKGDEGK
RGIPGESGQKGEPGIPGAPGLKGQAGIPGTPGIPGKRGYRGEKGEPSVAAKVMKGEPGSP
GLPGLTGPKGDKGDQGLKGMEGPAGPTGPPGINGEPGKAEIQNNENDIRNIPLMGPPGLP
GPPGIPGVPGTKGEVGLPGPPGLDGEKGPRGKPGELGPAGPVGPEGPRGLAGVMGSPGPK
GDKGDMGPSGSPGLDGPTGEKGATGSPGPIGLPGAMGSKGEPGDGGRSEMVYGPPGPPGP
PGPVGPAGSQGPSGPKGEPGMGVRGEKGATGQKGDKGDRGHLGLPGAHGLDGRPGPVGLI
GPAGLPGPAGPKGERGEKGDAGLLGPIGPQGIPGLVGPQGLKGNRGERGKKGNRGAKGDK
GDQGAPGLDAPCPLGDDGLPVPGCWNKGQHPFQLAKK
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggaagagggtctgcaacggggagtcatcggtaaaccaggagaggagaggaggacgtgt
ggggagcagcaagagcaaccttcaaaacagccaccgtggagaaactggaaagatttatcc
ggccttacgatatgcattgccgtggccgtgctgtgtctcggaggttgcattgtggttttt
gtgcggacctcggagttgcactccaggatagtgagtctggagcagcagcgggacgcgcag
ctctctgggtggatgttgtctctggagcaggtggagcccgttatcctgggtcgactggac
cagattcttgaggagaagctcgcagcacgcctcccaaagacgcgggagcaaagggaagct
cctcacagctgcctgtgccccccaggacctccaggtcctcctggacgagcgggctttccg
ggtgacaaaggaagtatgggaattcctgggagaatgggcttaaagggacacgcaggggag
aagggagcaccaggcgaaccaggcctgtccatcattggaccaagaggacctcctggacaa
cctggtacaagaggatttccaggctttccaggtcctatagggttggatggcaagcctggg
cagaatggactgaagggagacatgggtcagcgtggtcctaaaggattcccaggggaacca
ggacccaaaggggagaagggtgtatgtggcgactacacacatcggggcctctttgtgcag
gatcttcctctgaaaaccctggctgccatgcgctccagtcaggcactgacgttgaagatg
ttgcccatcactgtgcgcaacatgccctcaataagccctctaatcttaaaacgcctgaag
cagggcgagcctggagcgcagggacccccaggacctccaggacctcctggacttccaggg
agcccgggtctagatggggccagtggctcaccgggtaagcctggggagccgggcaagcca
gggaaagacccaaggcttttaccaggattgaagggtgagcctggtgtaccaggacaaaag
ggtgatcggggagatgtcggccctccaggtccagaaggcccaaagggagatgaaggaaag
aggggtatcccaggagagagtggacagaagggagagccaggtatcccaggtgctcctggg
ttaaagggtcaggctggcatccctggtacccctggcatccctggcaagaggggctatagg
ggggagaagggagagccaagcgtagcagccaaggtaatgaaaggagagccaggttcaccg
ggactgccaggcctaacgggacccaagggtgacaaaggcgaccaaggcctcaagggtatg
gaaggcccagctggacccacaggtcctccagggataaatggagagccaggaaaggctgaa
atccagaacaatgaaaacgacatccgcaacatacccctgatgggtccgcctggattacct
ggacctccaggcatccctggagtgcctggtaccaagggtgaagttggtctaccaggtcct
ccaggtctggatggagagaaggggcccagagggaaaccaggagagctcggtccagcaggt
ccagttggtcctgaggggcctagaggactggctggtgtcatgggttccccgggacctaag
ggagacaagggagacatgggtccatctggatcacctggtttagatggccctacgggtgaa
aagggggctacagggtcacctggccccattggattacctggcgcaatgggttctaaaggt
gaaccgggggatggaggaaggtcagaaatggtctatggacccccagggcccccaggacct
cccggaccagttggcccagcaggatctcaaggaccttcagggcctaagggagagccggga
atgggtgtcagaggagaaaagggagcgacaggtcagaagggagataagggagacagagga
catcttggactccctggggctcatgggttagacggcagaccgggtccagtgggtctaata
ggaccagctggtttgccagggccggctggaccaaagggagagagaggtgaaaagggagat
gctggattactgggaccaattgggccacaaggcatccctggtttagttggaccacaagga
ctcaaaggaaatcggggagagaggggcaagaaaggcaacaggggggccaaaggggataag
ggagaccaaggagcacctggattagatgccccctgtccattgggagatgatggtttacct
gtaccagggtgttggaataaaggtcaacatcctttccaactggctaagaagtag
DBGET
integrated database retrieval system
