Micromonospora chalcea: PVK74_14710
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Entry
PVK74_14710 CDS
T08919
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mchl
Micromonospora chalcea
Pathway
mchl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mchl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVK74_14710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mchl03019
]
PVK74_14710
03009 Ribosome biogenesis [BR:
mchl03009
]
PVK74_14710
Enzymes [BR:
mchl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PVK74_14710
Messenger RNA biogenesis [BR:
mchl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PVK74_14710
Ribosome biogenesis [BR:
mchl03009
]
Prokaryotic type
rRNA processing factors
PVK74_14710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Herpes_U5
DUF5351
Motif
Other DBs
NCBI-ProteinID:
WDQ02983
LinkDB
All DBs
Position
complement(3399206..3402634)
Genome browser
AA seq
1142 aa
AA seq
DB search
MLENEPEGGERTGAEPTGTPADNAATASGSAASAASASAQGAASGSADDGTAQGVTSAEG
ATAEGVAALEGVAETKPPARKRASRRKAAPLNQAEQTDAPVEASTAATGSGESPQAEVLA
PIAGELDTAPKTTRRRRKATPAKAVEEPVAAAGVEAASEEVVPPVKVTRTRRRKATPPAA
ETVAPDETATGGQTATDGVIDGPVSAPGGDLIAEGRADIDGAEATAPGQAGVAESTGTAG
RSRTRRRAATADKAASGDTATATGDKAATGDKAATGDAATTGGSGATAGDKAIAGLGEDV
EDEDAEAGTVEDASAAGARTHEVDLARSGGPADATGVVSTGAAVPRVDEEPAEPTPPTTR
RRRAALSAPTVLFMAPQPDEAPAVQVTYPAAEEPIEEAVETGRRRRRARREVEPVEAEAE
PEVVEEEPAAEAEESAEIDEDDETAAGRRRRRRGRRGRGRGKGGADEADDEDVEEPAAAE
TAEDETEESAEDEEPDGEGMTRRRRRRRRRGAGEADTAAEDGVPTVVKIREPRKPVDEVQ
GVSGSTRLEAKRQRRRDGREQRRTRPPILSESEFLARREAVDRVMVVRQRGDRTQIAVLE
DGVLVEHYVTRNSSATMAGNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEVNWDATGL
EGRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNGNASGISRKLP
DTERKRLRDALKKLVPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKATEGGAPV
LLYEEPDLVIRVVRDLFNEDFRELVIEGESAYDLVESYLSHVSPDLVARLRRHAGVADVF
AEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMTVIDVNTGKYTGSGGNLEETVTRNNLE
AAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLV
QMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPVPEKPRGGAGEKVKAVASAVAAPAEEK
SGRRRGRKAAAEKPAVEAVPEQPAAQPQAATEPPAAVAPPERTVAEVVETDDDYYDTQGY
DLSRFETDTPAAPAVADSQEGDSARLAAADDPDAIGDGDSDDDSGAPRRRTRRGGARRRT
RP
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagaacgagcccgagggcggcgaacggaccggcgcagagccgaccgggacgccc
gccgacaacgccgccaccgcctctggcagcgccgcgagcgcggcctccgccagcgcccag
ggtgccgcctccggcagcgccgacgacggcaccgcccagggcgtcaccagtgcggaaggc
gccaccgctgaaggcgtcgccgccctggagggcgtcgccgagaccaagccgccggcccgt
aagcgggccagccgtcgcaaggccgccccgctgaaccaggcggagcagaccgacgcgccg
gtcgaggcgtccaccgcggcgaccggcagcggcgagtcgccgcaggccgaggtgctcgca
ccgatcgccggagagctggacaccgcgcccaagaccacccggcggcgtcgtaaggcgacc
ccggcgaaggcggtcgaggaaccggtggccgcggcgggtgtggaggccgcctcggaggag
gtcgtgccgccggtcaaggtgacccggacccgtcgtcgcaaggccacgccgccggctgcc
gagaccgtcgcgccggacgagaccgccaccggcgggcagacggccacggacggggtgatc
gacgggccggtctccgcgcccgggggcgatctgatcgccgagggccgcgccgacatcgac
ggtgccgaggccaccgcgccgggccaggccggcgtcgcggagagcacgggtaccgccggg
cggtcccgcacccgccgccgcgccgccaccgccgacaaggccgcctccggggacacggcc
accgccaccggcgacaaggccgccaccggcgacaaggccgccaccggggatgctgccacc
accggcgggagcggggccaccgccggtgacaaggcgatcgccggcctcggcgaggacgtc
gaggacgaggacgccgaggccgggaccgtcgaggacgcgagcgccgcgggtgcgcgtacc
cacgaggtcgacctggcccgcagcggcggcccggcggacgcgacgggcgtcgtgtcgacg
ggcgccgccgtgccgcgcgtggacgaggagccggccgagccgacgccgcccaccacccgg
cggcgtcgtgccgcgctctccgcgccgaccgtcctgttcatggcgccgcagcccgacgag
gcgcccgccgtccaggtcacgtacccggcggcggaggagccgatcgaggaagcggtcgag
accggccggcgccgccgtcgcgcccgccgtgaggtcgagccggtcgaggccgaggccgag
ccggaggtcgtcgaggaggagccggccgccgaggccgaggagtccgccgagatcgacgag
gacgacgagacggccgccggccggcggcggcgtcgccggggtcgccggggccggggccgg
ggcaagggtggcgccgacgaggccgacgacgaggacgtcgaggagcccgccgcggccgag
accgccgaggacgagaccgaggagtccgccgaggacgaggagcccgacggcgaggggatg
acccgccgccgtcgccgccgtcgccgccgcggcgcgggggaggcggacaccgccgccgag
gacggcgtgcccaccgtcgtcaagatccgtgagccgcgcaagccggtcgacgaggtgcag
ggcgtctccggctcgacccggctggaggccaagcggcagcgccgccgggacggccgcgag
cagcggcgtacccggccgccgatcctgagcgagtcggagttcctggcccgccgtgaggcg
gtcgaccgggtgatggtggtccgccagcgcggcgaccgcacccagatcgccgtgctcgag
gacggcgtgctggtcgagcactacgtgacccgcaactcgtccgccaccatggccggcaac
gtctacctgggcaaggtccagaacgtgctgccgagcatggaggccgccttcgtcgacatc
gggcgcgggcgcaacgcggtgctgtacgccggcgaggtcaactgggacgccaccggcctg
gagggccgggcgcgctcgatcgagcaggcgctgcgctccggcgactcggtgctcgtgcag
gtgaccaaggacccgatcgggcacaagggcgcgcggctgaccagtcacatcgcgctctcc
ggccggcacctggtctacgtgccgaacggcaacgcctccggcatcagccgcaagctgccc
gacaccgagcgtaagcggctgcgggacgcgctgaagaagctggtgccggacggcgccggg
gtgatcgtccggaccgcggccgagggcgccagcgaggacgagctggcgcgtgacgtcaag
cggctgcaggcgcagtgggaggacatccaggccaaggcgaccgagggcggcgccccggtg
ctgctctacgaggagccggacctggtcatccgcgtggtccgggacctcttcaacgaggac
ttccgcgagctggtcatcgagggcgagtccgcgtacgacctggtcgagtcgtacctgtcg
cacgtctcgccggacctggtggcgcggctgcgccggcacgccggggtggcggacgtgttc
gccgagtaccggatcgacgagcagatcctcaaggggctggaccggaaggtcttcctcccc
tccggcggctcgctggtgatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacacc
ggcaagtacaccggctccggcggcaacctggaggagacggtcacccgcaacaacctggag
gcggccgaggagatcgtgcgtcagctgcggctgcgcgacctcggcggcatcgtggtgatc
gacttcatcgacatggtgctggagtcgaaccgggagctggtgctgcgccggctcaccgag
tgcctgggccgggaccgcaccaagcaccaggtcaccgagatcacctcgctcggcctggtg
cagatgacccgtaagcgcatcggcgcgggcctgctggaggcgttcagcgagacctgcgag
tgctgcaagggccggggcgtgatcattcacaccgagccggtgccggagaagccgcgcggc
ggcgcgggcgagaaggtcaaggcggtcgcctcggcggtcgccgcgccggccgaggagaag
agcggccgacgccggggccgcaaggccgccgcggagaagccggccgtggaggccgtaccg
gagcaaccggccgcgcagccgcaggccgccaccgagccgcccgctgcggtcgcgccgccg
gagcggaccgtcgccgaggtggtcgagaccgacgacgactactacgacacccagggctac
gacctgtcccggttcgagacggacacgcccgccgccccggcggtcgcggacagccaggag
ggcgactcggcccggctggccgccgccgacgacccggacgcgatcggtgacggcgacagc
gacgacgacagcggcgccccgcgccggcggacccgccgtggcggcgcccggcggcgtacc
cggccgtag
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