Methylorubrum extorquens DM4: METDI5824
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Entry
METDI5824 CDS
T00947
Name
(GenBank) putative peptidoglycan-binding protein (N-terminal domain)
KO
K21470
L,D-transpeptidase YcbB
Organism
mdi
Methylorubrum extorquens DM4
Brite
KEGG Orthology (KO) [BR:
mdi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
mdi01002
]
METDI5824
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
mdi01011
]
METDI5824
Peptidases and inhibitors [BR:
mdi01002
]
Cysteine peptidases
Family C82
METDI5824
Peptidoglycan biosynthesis and degradation proteins [BR:
mdi01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
METDI5824
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
CAX27423
UniProt:
C7CA62
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All DBs
Position
5811219..5812979
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AA seq
586 aa
AA seq
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MPNVIPALRRPRRARLIGGTGAALALLLAGPLRAESVPEPQPDSRINLRIEPKAEAAPEP
KRELRADPKPEPKIDSKLDPKPDTKSAPKLERPTADTVAVPADAPPAKKVSRELPPVVYA
RVSEDPLPSYTAQTFVDTMRAAERYQVYAEAGGWKTLPADFAPKPGDSHAAIPSLRHHLT
LTGDLPADAPPSDRFDPPLVAAVKSFQARHGLPDAGIFGRLTLNALNVPADVRQRQLRAS
AQRLMGSSFGFGERYVTVNIPSATVEAVENGTVTRRYVAVVGSPDKQTPAVETRITDVNL
NPTWTVPVSVIKNEIIPTMRKNPGYLAKNRIRILGPGGVEVDPNAIDWNTQKATNYTLRQ
DSGLDNSLGQVRIDMPNRHAIYMHDTPSKSLFAGSVRFHSHGCVRVGQVKEFAAWLLQGT
EGPNGPGSAWGPIEIETAIAVGERRDVKLVKPTPVAFVYMTGYATSDGRVHFRDDIYGLD
TPPAPAAATPPAPDVTTTGAITPRAGPAPRPAAPGVAPRPLPPTAQAAPVKPAAAKPAPV
GVAPVPAPATALPAPPKPQARKAAPPARGPESEPVPMPPGLVGGRG
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgccgaatgttatccccgccctgcgcaggccccgccgcgcccggctcatcggcggcacc
ggagccgccctcgccctattgctcgccggcccgctccgggccgagtccgtccccgagccg
cagcccgattcgcggatcaacctgcggatcgagccgaaggccgaggccgcgccggagccg
aagcgcgagctgagggccgatccgaagccggagcccaaaatcgactcgaagctcgatccg
aagcccgacacgaagtctgcgccgaaactggagcgcccgaccgccgacacggtggcggtt
ccggccgacgcgcccccggccaagaaggtatcgcgggaattgccgccggtcgtctatgcc
cgcgtgtccgaggatccgctgccgagctacaccgcgcagaccttcgtcgacacgatgcgc
gccgccgagcgctaccaggtctacgccgaggccggcggctggaagacgctgcccgccgac
ttcgccccgaagcccggcgacagccacgccgccatcccctcgctgcgccatcaccttacc
ctgaccggcgaccttcccgccgacgcgccgccgtccgaccgcttcgatccgccgctggtg
gcggccgtgaagtcgttccaggcccgccacggcctgccggatgccggcatcttcggccgg
ctgacgctgaacgccctcaacgtgccggccgacgtgcggcagcggcaattgcgcgcctcg
gcgcagcggctgatggggtcgagcttcggcttcggcgagcgctacgtgaccgtaaacatc
ccctccgccacggtggaggcggtggagaacggcacggtgacccgccgctacgtcgccgtg
gtcggttcgcccgacaagcagacccccgcggtcgagacccgcatcaccgatgtgaacctc
aatccgacctggaccgtgcccgtctcggtgatcaagaacgagatcatcccgacgatgcgc
aagaatccgggctatctcgccaagaaccgcatccgcatcctcggccccggcggcgtcgag
gtcgatccgaatgcgatcgactggaacacgcagaaggcgaccaactacacgctgcgccag
gattccggcctcgacaattcgctgggccaagtgcgcatcgacatgccgaaccgccacgcg
atctacatgcacgacaccccgtcgaagtcgctgttcgccggttcggtgcgcttccactcg
catggctgcgtgcgcgtcggtcaggtgaaggagttcgccgcttggctgcttcagggcacc
gagggaccgaacgggccgggctccgcttggggcccgatcgagatcgagaccgccatcgcc
gtcggtgagcggcgcgacgtgaagctcgtgaagccgacgccggtcgccttcgtgtacatg
accggctacgcgacctcggacggccgggtgcatttccgcgacgacatctacggcctcgac
acaccacccgcgccggccgcggcgacgccgcccgcccccgatgtgacgaccaccggtgcc
atcacgccccgcgcggggccggcaccccgcccggccgcaccgggcgtcgcgccgcgtccc
ctgccgccgaccgcgcaggctgcgcccgtcaagccggcggcggccaagcccgcaccggtc
ggagtcgcgcccgttccggcgcccgcaaccgccctgcccgctccgccgaagccgcaggcc
cgcaaagccgcgccgcccgcccgtgggccggagagcgagccggtcccgatgccgcccggc
ctcgtcggcggccggggctga
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