Mucilaginibacter daejeonensis: LLH06_02735
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Entry
LLH06_02735 CDS
T07909
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mdj
Mucilaginibacter daejeonensis
Pathway
mdj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LLH06_02735 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mdj03400
]
LLH06_02735 (ligD)
Enzymes [BR:
mdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LLH06_02735 (ligD)
DNA repair and recombination proteins [BR:
mdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LLH06_02735 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UEG53889
LinkDB
All DBs
Position
complement(601342..604092)
Genome browser
AA seq
916 aa
AA seq
DB search
MSLKEYNQKRDFKKTKEPKAGKSNDKDHLTFVVQKHDASRLHYDFRLEMEGVLKSWAVPK
GPSTDPKVKHLAMRVEDHPFDYRDFEGIIPEGEYGGGTVIVWDQGTYEPIEEIKGKKAQE
KHLLKQLESGSLKIKLHGEKLKGEFALVKTHGMGSADSWLMIKHKDEFASTADITKKDRS
VLSDKTIAQMEKTSDKVWQNGHEENLEKPTKSKKTSTKTNKKESPKEADQKLAEKIDTAE
TEDISVAKLLKNAPKAAIPKDIRPMKATLIDEPFDDPDWVYEVKWDGYRAVAKVGKDSAE
LISRNNIPFDKYYPIVDLLKKWNTDAVIDGEIVVLNDKGLSDFGALQNWRSEADGHLVYY
VFDILWYQGKNLMDLPLIQRQAILKEILPADDDRLRKSEVFTASGVEFFDAATRIGLEGI
MAKKADSVYTSDLRSKEWLKIKVQRRQEVVIAGFTKNAGTSKPFSALVMGLYDGKKLVYA
GKVGTGFNAKMQTEMMEQFEPLITDKVPFETEPDVDKPSRFRPQRMGAKPTWLKPQLVGE
VNYAEVTSDGIFRQASFKGMRTDKKAKDVVLETPKDTDNVVHEKDAPAEKPKARAGIKPP
ASNERKTLLNPTEETQVRKICGHDLKFTHLSKVYWPEDNITKRDMFNYYYRIADYILPYL
LDRPMSLNRFPNGIHGPSFYQKDVKGKAPEWIDKTFPYTTSDGEHKEYLVGSDESYLLWM
ASLGCIEMNPWFSRIQSPDCPDFCVIDLDPDKNTFEQVIQAACKVKEVLDAIDVPCYVKT
SGSTGIHIYIPLKGQYSYDQSQLFARIIVNKVHEELPDFTSLERKIAARKGKMYLDFLQN
RPGATIAGAYSLRPKPGATVSMPLSWDEVKPGLTMKDFTIFNAFDRLKETGDLFKGVLGD
GIDLVKVIEKAKKSFE
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaaagaatataatcaaaaacgggacttcaaaaagaccaaagaacccaaagcc
ggtaaaagcaacgacaaggaccacctcaccttcgtggtacaaaagcacgatgcctcacgc
ctgcattatgactttaggctggagatggaaggtgtgcttaagagttgggcggtacccaaa
ggcccgtcgaccgaccctaaggtgaaacacctggccatgcgggtagaggatcacccattt
gattaccgcgactttgagggcatcatccccgaaggtgaatatggtggtggcaccgtgatc
gtttgggaccagggcacctacgaaccgatcgaggagatcaaaggcaaaaaggcccaggag
aaacatttgttgaaacagctggagtcgggctcattaaagatcaaactccacggcgaaaag
ttgaaaggcgagttcgccctggtgaagacccatggcatgggcagtgccgactcgtggctc
atgatcaaacataaagacgagttcgcatcaacggccgacatcaccaaaaaggaccggtca
gtactgtctgacaagaccattgctcagatggaaaagaccagtgataaggtgtggcagaat
ggccatgaggaaaacctggaaaaaccaacaaaaagtaagaaaacctcaacaaagaccaat
aaaaaggaatctcccaaagaggccgaccagaaacttgcagaaaagatagacactgccgaa
actgaggatatatcggtagcgaaattattgaagaacgcacccaaagccgccatccccaag
gacatcagacccatgaaggccaccctgatcgatgagccatttgatgatccagactgggtt
tacgaagtaaagtgggacggctatcgggccgtagccaaagtgggcaaggatagcgccgaa
ctcatttcccgaaacaatatcccgttcgataaatattaccccatcgttgacctgctcaaa
aagtggaatactgatgcggtgatcgatggcgagatcgtggtattgaatgacaaaggtctg
tcagattttggcgccctccagaactggcgcagcgaggccgacggccacctggtctactat
gtgttcgatatattgtggtaccagggcaagaacctgatggatctgccgcttattcaacgc
caggccattttaaaagagatactccctgccgatgatgaccgcttgcgcaaaagcgaggtg
ttcacggccagcggggtcgaattttttgatgcggcgacacgaataggcctggagggcatc
atggctaaaaaggccgacagtgtttacacttccgacctccgttccaaagaatggctcaag
atcaaggtacaacgccggcaagaggtggtgatcgccggtttcactaaaaatgcgggtacc
agtaagcccttcagcgcgttggtaatgggcctttatgatggcaaaaagctggtttacgca
ggcaaagtaggcacaggcttcaatgccaagatgcagaccgaaatgatggaacagttcgag
ccactcatcaccgataaggtaccttttgagacagagcctgatgtggataagccttcacgc
ttccggccgcagcgcatgggtgctaaacctacctggctgaagccccaattggtaggcgag
gtaaattacgctgaggtgaccagcgatggcattttccgccaggcctcatttaaaggcatg
cgcaccgataaaaaggccaaggatgtagttttggagacgccaaaggacacggacaacgtt
gtgcatgaaaaagatgcgcctgccgaaaagcctaaggcacgtgccggcattaagccacct
gccagcaatgaacggaagacattgctcaaccctaccgaagagacacaagtacgtaagata
tgcggccatgacctcaaattcacacatttgagtaaggtttactggcctgaggacaatatc
accaaacgggatatgttcaattactactaccgcatagccgattatatactgccctacctg
cttgaccggcctatgtcgctcaatcgctttcctaacggcatacatggcccaagcttttac
caaaaggatgtaaagggtaaagctcccgaatggatcgacaagaccttcccttacaccacc
agcgatggcgagcacaaggaatacctggtaggatcagatgaatcgtacttattgtggatg
gcttccctgggctgtatcgagatgaatccctggttcagccgtatacagtcgcccgattgc
cccgacttttgtgtgatcgacctcgaccctgacaagaacacttttgaacaggtcattcaa
gcggcctgcaaggtcaaagaggtattggatgccattgatgtgccctgctatgtcaaaaca
tcgggctctacgggtatccacatttatatcccattaaaaggccagtacagctacgatcag
tcgcagttatttgcgcgtatcatcgtgaataaggtgcatgaggaactgcctgatttcacc
agcctggaacgtaagatcgcggcccgtaaaggcaaaatgtatctcgactttttgcagaat
cgccccggtgctaccatcgcaggcgcgtactcgttgaggcccaaaccaggcgccaccgtg
tccatgccgttaagttgggatgaagtgaagcctggcctaaccatgaaagatttcaccatc
tttaacgccttcgaccgcctgaaggagaccggagacctttttaaaggtgtgctgggtgat
ggcattgacctggtgaaggtgatcgagaaggctaagaaaagttttgagtaa
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