Methanoculleus marisnigri: Memar_1320
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Entry
Memar_1320 CDS
T00477
Name
(GenBank) Excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mem
Methanoculleus marisnigri
Pathway
mem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Memar_1320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mem03400
]
Memar_1320
DNA repair and recombination proteins [BR:
mem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Memar_1320
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Memar_1320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
P-loop_SecA
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABN57250
UniProt:
A3CV50
LinkDB
All DBs
Position
complement(1304482..1306410)
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AA seq
642 aa
AA seq
DB search
MTAFHLKADFKPTGSQPDAIRKLTDGLSRGEQYQTLLGVTGSGKTFTIANVVEEVQKPTL
VIAHNKTLAAQLYNEFRSFFPDNRVEYFVSYYDYYQPESYIAKRDLYIEKDAQINPKIEQ
MRLAATASLLSRPDTIIVASVSCIYGLGNPENFQGMGFEMKVRDRMRRDDIIRRLVDIQF
ERNDIELMPGRFRVKGDTIDIVPGYFNNIIRIELFGDEIDRISEIDKTSGERLEAMDYFF
VYPARHFVAPEEEKERAIASIEQELEEWLPNLDMLEAHRLRQRTLYDIDMLRETGTCKGI
ENYSRHFDGRKAGEQPYCLLDYFPEDFLMVIDESHQTLPQVRGMYNGDYSRKKSLVDYGF
RLPSAFDNRPLKFEEFSGYMKNVIFVSATPGDYELKRSSVAEQIIRPTGLVDPAVEIRPI
EGQIPDVMTEIRATIERGDRILLTTLTKRLAEELSEYLAEQGIKTRYLHSEIDTIERTEI
IRQLRLGKYDVLVGINLLREGLDIPEVGFVGILDADKEGFLRDARSLVQTIGRAARNVNA
KVVLYADTMTDSIKKAMAETGRRRAMQLDYNVRHGITPQTIVKPIREKEVDITDIKHVPK
SEVPNLIIELEADMREAAERLEFERAIALRDMIKRLQEGKGR
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgacggcatttcaccttaaagcggattttaagccaaccggctcgcagcccgacgcgatc
cggaaacttaccgacgggctttcccgcggcgagcagtaccagaccctcctcggggtcacg
gggtcggggaagacgtttacgatagcaaacgtcgtcgaggaggtccagaagcccaccctc
gtcatagcccacaacaagacgcttgccgcccagctctacaacgagttcaggtcgttcttc
cccgataaccgggtggagtacttcgtctcctactacgactactaccagcctgagtcctac
atcgcgaagcgcgacctctacatcgagaaagacgcccagatcaaccccaagatcgagcag
atgcggcttgcggccacagcatcgcttctctcccgcccggacaccatcatcgtcgcctcg
gtctcctgcatctacggtctcgggaaccccgaaaacttccaggggatgggctttgagatg
aaggtccgcgacaggatgcggcgggatgatatcatcaggagactcgtcgacatccagttc
gagcgaaacgacatcgagctcatgccgggccggttccgcgtgaagggcgacaccatcgat
atcgtccccggctacttcaacaacatcatccgtatcgaactcttcggggacgagatcgac
cggatcagcgagatcgacaagacctcgggagagcggctggaggcgatggactacttcttc
gtctacccggccaggcacttcgtcgcccccgaggaggagaaggagcgggcgatagcctcg
atcgagcaggaactcgaggagtggctcccgaacctcgatatgctcgaggcgcatcgcctc
cgccagcggacactctacgacatcgatatgctccgcgagaccgggacctgcaaggggatc
gagaactactcccgccacttcgacgggagaaaagccggcgaacagccttactgcctgctt
gactacttccccgaggacttcctgatggtgatcgacgagagccaccagaccctgccccag
gtcagggggatgtacaacggcgactactcgcggaagaagtccctcgtggactacggcttt
aggctcccgtcggcgttcgacaaccggccgctgaagttcgaggagttctcgggctacatg
aaaaacgtcatcttcgtctcggcgacccccggcgactacgaactgaaacgatcgagcgtc
gcggagcagatcatccggcccacggggctcgtcgacccggcagtcgagatccggccgatc
gaggggcagatcccggacgtgatgacggagatccgggccaccatcgaacgcggcgaccgc
atactgctgacgacccttacaaagcggctcgccgaggaactctcggagtatctcgccgag
caggggatcaagacccgctacctccattccgagatcgacaccatcgagcggacggagatc
atccggcagctccgtctcgggaagtacgacgtcctcgtcgggatcaacctcctgcgggag
gggctcgacatccccgaggtggggttcgtcggcatcctcgacgccgacaaggaagggttc
ctccgcgacgcgagaagcctcgtccagaccatcgggcgggccgcccggaacgtcaacgcg
aaggtcgtgctctacgccgacaccatgaccgactcgatcaagaaagcgatggccgagacc
gggcggcggcgggcgatgcagctcgactacaacgtccggcacggcatcacgccgcagacg
atcgtaaaaccgatccgcgaaaaagaggtcgatatcaccgatatcaaacacgtcccgaag
tccgaagtcccgaacctgatcatcgaactcgaggccgatatgcgggaggcggcggagcgc
ctggagttcgagcgggcgattgctctgcgggatatgatcaagaggctgcaggaagggaaa
gggcggtag
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