Manihot esculenta (cassava): 110606905
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Entry
110606905 CDS
T05761
Name
(RefSeq) ATP-dependent RNA helicase RhlE isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110606905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mesc03041
]
110606905
03009 Ribosome biogenesis [BR:
mesc03009
]
110606905
Enzymes [BR:
mesc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110606905
Spliceosome [BR:
mesc03041
]
Complex A
U1 snRNP components
U1 related factors
110606905
Complex B
110606905
Ribosome biogenesis [BR:
mesc03009
]
Eukaryotic type
Pre-60S particles
Helicases
110606905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
110606905
NCBI-ProteinID:
XP_021601598
LinkDB
All DBs
Position
18:complement(15560877..15568385)
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AA seq
566 aa
AA seq
DB search
MSYVPPHLRNSSATTTTTTTTSVTLDNVNDHITKLSNSASSNFHSKISSATSTWNSLPTL
SNASRRTSAAPRTVAVPEVFFPQWNPSERVLRLNSQQIEDVRMRLNVEVTVALDSPPAPA
PIESFEDMLLHPSIMKDIAYHGYSRPTSIQAQAMTVALSGRDLLGCAETGSGKTAAFTIP
MIQHCLAQSPIRRGDGPLALVLAPTRELAQQIEKEVKCFSRSLESFRTAIVVGGTNIADQ
RSELRAGVDVIVATPGRFIDHLQQGNSSLSRISFIVLDEADRMLDMGFEPQIREVLRNLP
KRHQTLLFSATMPVEIETLSQEYLTTPVQIKVGKVSSPTANVSQVLKKVSESEKIDCLLA
LLVEDASQSERSGHPFPLTVVFVERKTRCDEVAEALVAQGLQAVAFHGGRSQSEREAALQ
DFRSGSNNILVATDVASRGLDVTGVAHVINLDLPKTMEDYVHRVGRTGRAGSAGQATSFY
TDRDLFLVAQIKKAIADAQSGNKVAFATGKVARRKEREAAALQKEARNSVSKLVGPTSLN
IEDKYRFMIASSSIKGEGAADSAWDD
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtacctccacacttgaggaactcttccgccaccaccaccaccaccactacc
acttcagtaaccctagataacgtcaatgatcacatcactaagctctctaattccgcttct
tcaaatttccactctaaaatctcttctgctacttctacttggaactctctccccactcta
tccaatgcgtctcgccggacctccgctgcgccgagaaccgtggctgttcccgaagttttt
tttcctcaatggaacccatccgagcgcgttcttcgcttgaattcgcagcagattgaagac
gttcgtatgcggcttaacgttgaagttactgttgctttggattctcctcccgcacctgcg
ccaattgaatcatttgaagatatgcttttgcacccaagcatcatgaaggatattgcatat
catggatattctaggccgacttctattcaggcgcaggccatgacagtggcacttagtggt
agagatctattaggttgtgctgaaactggtagtggcaaaactgctgcattcaccattccg
atgatacagcactgcctggctcagtctcctattcgacgaggtgatggaccactggcattg
gttttagctcctaccagagagctagctcaacagattgagaaggaggtcaaatgttttagc
agatctcttgagtcattcagaactgcgatagttgtgggtggaactaacattgctgaccag
aggtctgaactacgggcaggagtggatgtaattgttgctactccaggaagattcattgat
catttacaacaaggaaacagttccctctctagaatttcatttattgttctggatgaagct
gatagaatgctggatatggggtttgaaccacagattagagaggtattgcgcaatcttcca
aaaaggcatcaaactctgctgtttagtgcaactatgcctgtggagattgagacactatcc
caggagtacctaactacccctgtgcaaatcaaggttggaaaagtgagtagcccaactgca
aatgtatctcaagttctgaaaaaggtttctgaaagtgagaagattgattgccttctagct
ttgcttgtggaggatgcatcacagtctgaaagatccggtcatccctttcctttaactgtc
gtctttgtggaaaggaagacaaggtgtgatgaagttgctgaagctctggtagcacaaggt
ttacaagcagttgcttttcatggtggccgtagtcagagtgaaagagaagcagctctacaa
gattttagaagtggctccaataatattttggttgccactgatgttgcatctcgtggattg
gatgtaactggagttgctcatgtgattaatctggatcttcctaagacaatggaagattat
gtacatcgagttggaaggacaggccgtgcaggatcagctggtcaagctacttcattttac
actgatcgtgatctgttcctagtggcacaaataaagaaagcaattgcagatgctcaatct
ggcaacaaagtggcttttgcaactgggaaggttgctagaaggaaagagagagaagcagca
gctttgcaaaaggaagcgaggaattctgtgtctaagttggttggacccacttcattaaac
attgaggataagtataggttcatgattgcctcttcaagcatcaaaggagagggcgcagca
gatagtgcttgggatgattaa
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