KEGG   Martelella endophytica: TM49_01330Help
Entry
TM49_01330        CDS       T03801                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mey  Martelella endophytica
Pathway
mey03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mey00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TM49_01330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mey03400]
    TM49_01330
Enzymes [BR:mey01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TM49_01330
DNA repair and recombination proteins [BR:mey03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     TM49_01330
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AJY44631
UniProt: A0A0D5LKF2
LinkDB All DBs
Position
303233..305722
Genome map
AA seq 829 aa AA seqDB search
MAEADRLAEYEQRRDFSKTREPKRGGPKKAGKTLGFVVQKHDARRLHYDFRLEWDGALLS
WAVTRGPSDDPGEKRLAVRTEDHPLDYADFEGTIPKGHYGGGTVMVWDRGTWEPLHDPAE
GLKSGKLHFNLSGERMQGGWALVRMRRRSGEKRENWLLIKERDETASDTPDALTEKNLRS
VKTGRSLKGIESDKPPKKPSTRPAKAKAAESKSAKKMPAFRKPQLATLYDTAPEGEDWLH
ETKFDGYRCIAAIAGGKARLFTRSGKDWTEKYAALDGAFEVLGNETLLIDGEIMAADIPK
GQSAFSALQQALHDDGALVFYVFDILERGGKSLTEKPLSDRKAVLEQALAPLDPDGPVRL
STYITGDGSDILKQICKAGGEGIISKRADAPYSHSRTSTWRKVKCTKRQEFVIGGYSPSD
KKGRPFSSLLVGQFDEDGGFHYRGRVGTGFSEETLETLAEEFSARARKTSPFDDVPASIA
RKARWVTPELVAEVDFAEFTADGHIRHGAFLGLRDDKEAKTVAPEKSKASDAVKVAGIAI
SHPDRQLFGKAGISKGDLAEYYGRAGKRMLEASGERPFSLLRYPSGIADEGFFQKHAGKG
FPDELTEIDIEEKDGSTAQYLYTKKPAGFVAAAQFGTIEFHGWGSRVDRLERPDRLIFDL
DPDEGLGFAETKKAAFDMRDLLEELGLAATAMVTGGKGIHVTVPLRRTVSWDTLKMFAKT
FAHILAEREPERFTATMSKEKRKGKIFIDWLRNERGATAIMPYSVRAREGAPVATPVTWE
ELKPMKSAAAFTLPDMDKRLAAPCPYVKAFKEPQSLSAKVIDKLEKLAD
NT seq 2490 nt NT seq  +upstreamnt  +downstreamnt
atggctgaagccgaccgccttgccgaatatgaacagcgccgcgacttctcgaagacccgt
gagccgaagcgcggcgggccgaaaaaggccggcaagacgctcggtttcgtcgtccagaag
cacgatgcccgccgcctgcactacgatttccgcctcgaatgggatggcgcgctgctaagc
tgggcagtgacccgcggcccgagcgacgaccccggcgaaaagcgccttgccgtgcgcacc
gaagaccatccgctggattacgccgacttcgagggcacgatccccaaggggcattatggc
ggcggcacagtgatggtctgggacaggggcacatgggaaccactgcacgatccggccgaa
ggcctgaaatccggcaagctgcatttcaacctctccggcgagcggatgcagggcggctgg
gcgttggtgcgcatgcgccgccgcagtggcgaaaagcgcgaaaactggttgctgatcaag
gagcgcgacgagaccgcaagcgacacgcctgacgcactgaccgagaagaacctcaggagc
gtcaagacgggccggtcgctgaaggggatcgaatccgacaagccgccgaagaaaccttcg
acaaggcccgctaaggcgaaagccgccgagagcaaatcggcgaagaagatgcccgccttc
cggaaaccgcagctcgcgacgctttacgacaccgcgcccgaaggcgaggactggctgcac
gagaccaagttcgacggctaccgctgcatcgccgccattgccggcggcaaggcaaggctt
ttcacccgctccggcaaggactggacggagaaatatgccgccctcgatggcgccttcgag
gtgcttggcaacgagacgctgctgatcgatggtgagatcatggcggcggatatcccgaag
ggacaatcggccttctccgccctgcagcaggcgctgcacgacgacggcgcactggttttc
tacgtcttcgacattctcgaacgtgggggcaaatcgctgaccgagaagccgctttccgac
cgcaaggcggtgctggaacaggcgcttgcgcctctcgatcccgatggcccggtgcgactc
agcacctatatcaccggcgacggcagtgatatcctgaagcagatctgcaaagcgggaggc
gagggcatcatctcgaagcgggccgatgcgccttatagccacagccgcacgagcacttgg
cggaaggtgaaatgtacgaagcggcaggaattcgtcatcggcggctattcgccgtcggac
aagaaggggcgtccgttctcgtcgctgctggtgggccagttcgatgaggacggcggtttt
cactatcgcggtcgggttgggaccggcttttcggaggaaacgctggaaacgctcgccgaa
gagttttccgcgcgcgcccgcaagacctcgcccttcgacgatgtgccggcctcgattgcc
cgcaaggcgcgctgggtaacaccggaactggtggcggaggtcgattttgccgagttcacg
gctgacggccatatccgccacggcgcctttctcggcctgcgcgacgacaaggaggcaaag
acggtggcaccggagaaaagcaaggcaagcgatgcggtgaaggtcgccggcatcgccatc
tcccatcccgaccggcagcttttcggcaaggccgggatcagcaaaggcgacctcgccgaa
tattacggacgcgccggcaaacgcatgctggaggcgagcggcgagcggccgttttcgctg
ctgcgctatccttccggcatcgcggatgaaggctttttccagaagcacgccggcaagggc
tttccggacgaactcaccgagatcgatatcgaggaaaaggacggcagcacggcgcagtat
ctctatacgaagaagcctgcgggcttcgtcgccgccgcgcagttcggcacgatcgagttc
cacggctggggttcgcgcgtcgaccggctcgaacgaccggaccggctgatcttcgatctc
gatccggatgagggcctcggctttgcggaaacgaagaaggccgccttcgacatgcgcgac
ctgcttgaagaactcggcctcgccgccactgccatggtcaccggcggcaagggcatccat
gtcaccgtgccgctgcggcgcacggtgagctgggacacgctgaagatgtttgcaaaaacc
tttgcccatatcctcgccgaacgcgagccggagcgcttcaccgcgacaatgtcgaaggaa
aagcgcaagggaaagatcttcatcgactggctgcgcaacgagcgcggcgccaccgcgatc
atgccctattccgtccgcgcgcgagagggcgcgccggtggcgacaccggtgacctgggag
gagctgaagccgatgaaatccgccgccgccttcacccttcccgacatggacaagcggctt
gccgccccctgcccctatgtcaaagccttcaaggagccgcaatcgctttcggccaaggtc
atcgacaaactggagaagctcgccgattag

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