Methanocella conradii: Mtc_0260
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Entry
Mtc_0260 CDS
T01774
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
mez
Methanocella conradii
Brite
KEGG Orthology (KO) [BR:
mez00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mez03019
]
Mtc_0260
03009 Ribosome biogenesis [BR:
mez03009
]
Mtc_0260
04131 Membrane trafficking [BR:
mez04131
]
Mtc_0260
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mez04147
]
Mtc_0260
Messenger RNA biogenesis [BR:
mez03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Mtc_0260
Ribosome biogenesis [BR:
mez03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Mtc_0260
Membrane trafficking [BR:
mez04131
]
SNARE
SNARE associated proteins
Others
Mtc_0260
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Mtc_0260
Exosome [BR:
mez04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Mtc_0260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
TIP49
AAA_2
AAA_5
CDC48_2
AAA_22
AAA_14
AAA_33
AAA_28
nSTAND3
IstB_IS21
AAA_18
ABC_tran
NACHT
RNA_helicase
AAA_24
Sigma54_activat
Mg_chelatase
Parvo_NS1
AAA_7
ATPase
AAA_17
ATPase_2
SLFN-g3_helicase
NB-ARC
Zeta_toxin
AAA_3
PhoH
Sigma54_activ_2
AAA_19
bpMoxR
TsaE
AAA_25
DUF815
KAP_NTPase
ResIII
Bac_DnaA
Motif
Other DBs
NCBI-ProteinID:
AFC99031
UniProt:
H8I928
LinkDB
All DBs
Position
complement(259297..261579)
Genome browser
AA seq
760 aa
AA seq
DB search
MTVQKEEKARVRLKVAEADKREVGRGIARINERHIKEMGVSYGDVIQISGRRSTAAIVGS
AFPSDMHLDIVRIDGIIRHNAGTTLGDYVEVSRAKWSEAKKVVLMPVQKGIRIYASPESL
QASFLNRPVCQGDIVSTSTYTPPSQSFNSNLMFEEFFRDFFSSPSFGLGEVKLAIASTVP
AGVVKITEVTEIQLLPEATEVIKSEVPEVTYEDLGGIRDAIIKIREMIELPLKYPELFQR
LGIDPPRGVLILGPPGTGKTLLAKAVANESDAYFTSINGPEIMSKYYGESEQHLRDVFKE
AESNAPAIIFIDELDSIATKRAEVTGEVERRVVAQLLSLMDGLKTRKNVIVIGATNRPEA
IDTALRRPGRFDREIELRVPDKSGRKEIFQIHTRSMPLTPDVDLDELADRTYGFVGADIA
ALCKEAAMNVLRRVLPSIDLKEQALPREILERLRVSRHDFEEALKIIQPSALREIMIEVP
NVTWDDIGGLTEVKMLLREAVEWPLRYADSFRRVGVEAPKGVLLYGPPGTGKTLLAKAIA
NESQANFITAKGSDLLSKWYGESEKHISEVFKKARQVAPAIVFLDELDALAPVRGSAAGE
PRVTERIVNQLLSELDGLEELRGVIVIGATNRPDIIDPALLRPGRFDEIILVPVPDRGAR
REIFKVHMRQMPVAEDVVLNELVDRTDNFTGADIASVCKKAGRLALREDLNAVVVRRKHF
MEALKLTEPSVTEEMVRYYQNIGGELKRKSAREIERSMYI
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgcaaaaagaagagaaagcgagggtcaggctgaaggtggcggaggccgacaaa
agagaggtagggaggggtatagcgcggatcaacgagcgccacataaaggagatgggcgta
tcttacggcgacgtcatccagatcagcgggaggaggagcacggcagccatcgtaggaagc
gccttcccgtctgacatgcaccttgacatcgtcaggatcgacggcataataaggcataac
gcgggcaccacgctgggcgactacgtggaggtgtccagggcaaagtggagcgaggcgaaa
aaggtggtgctcatgcccgtccagaaggggataaggatatacgcctctccagaaagcctg
caggcctcttttttaaaccgccctgtatgccagggggacatagtatcgacttcgacctat
acgccgccgtcgcaatccttcaactcaaaccttatgttcgaggaattttttcgggacttc
ttctcgagcccttcgttcggtttgggcgaggtcaagcttgcgatcgcgtcgaccgtcccg
gccggcgtggtcaagataacggaggtgacagaaattcagctattgcctgaggcgaccgag
gtaataaaaagcgaggtgcccgaggtcacgtatgaggacctgggcgggataagggacgcg
ataataaagataagggagatgatcgagcttccgctgaaataccctgagcttttccagcgg
ctcggcatagacccgcccaggggtgtgctcattttagggccgcccggcaccgggaagact
ctgctcgccaaggccgttgcaaacgagtcggatgcttacttcacgtccataaacggcccc
gagatcatgtccaagtactatggggagtcggagcagcacctgagggacgtgttcaaggag
gcggagagcaacgcacccgccatcatcttcatagacgagctggactcgatagccacaaag
cgggcggaggtgacgggcgaggtggagcggcgggtggtggcccagctcttatccctgatg
gacgggctgaagacgaggaagaacgtcatcgtcataggcgctacgaataggcccgaggcc
atcgatactgccctgagaaggcccgggcgcttcgaccgggagatagagcttcgggtgccg
gacaagtccggccgcaaggagatattccagatacacacgaggagcatgcctctcacccct
gacgtggatttggatgagctggccgacaggacgtacggcttcgtgggggcagatattgca
gcgctttgcaaggaggcggccatgaacgtgctccggagggttctgcccagcatcgacctg
aaggagcaggccctgcccagagaaatactggagcggctcagggtgtccaggcacgacttc
gaggaggccctgaagataattcagccttcggcgcttcgggaaatcatgatagaggtgccg
aacgtgacctgggacgacataggaggcctcacagaggtcaaaatgctgctgagagaggcg
gtggagtggccgctgcgatacgccgattctttccggcgcgttggggttgaggcgcccaag
ggcgtgttattgtacggccctcccggcaccggcaagacgctgcttgccaaggccatagcc
aacgagagccaggccaacttcataacggcgaaggggagcgacctgctctcaaagtggtac
ggcgagtccgagaagcacataagcgaggtgttcaagaaggcccggcaggttgcccccgcc
atcgtgtttttagacgaattggacgcccttgcgcccgtcaggggcagcgctgcgggggag
cccagggtcacggagcgcatcgttaatcagcttctatccgaattggacggcctggaagag
ttgcggggggtcatcgtcataggggcgaccaacaggccggacatcattgacccggcgctg
ctcaggcccggcaggttcgacgagatcatcctggtgccagtgccagaccgtggagcgaga
agggagatattcaaggttcacatgcgccagatgccggtggccgaggacgtcgtgctcaac
gagctcgtggacaggacggataacttcacgggtgcggacatcgcctccgtgtgtaagaag
gcgggccggctggccctcagggaggacctgaacgcagtagtcgtcagacgtaagcacttc
atggaggcgctgaagcttaccgagccctcggtgaccgaggagatggtgcgctactaccag
aatataggcggcgagcttaagcgtaagagcgcaagggagatagaaaggtccatgtatata
tga
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