Methanobacterium formicicum DSM1535: DSM1535_0576
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Entry
DSM1535_0576 CDS
T03743
Name
(GenBank) tRNA-splicing endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
mfi
Methanobacterium formicicum DSM1535
Brite
KEGG Orthology (KO) [BR:
mfi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfi03016
]
DSM1535_0576
Enzymes [BR:
mfi01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
DSM1535_0576
Transfer RNA biogenesis [BR:
mfi03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
DSM1535_0576
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Sen15
HEPN_RnaseLS
Motif
Other DBs
NCBI-ProteinID:
CEA12937
UniProt:
A0A090I751
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All DBs
Position
583759..584271
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AA seq
170 aa
AA seq
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MDAELIGELVIIKDKKAVALSEKSHYGKYNQEELQLSLIEAFYLQEKGKINILNRENQGK
IISPHQMRKIIQNEDLFYRYIVYQDLRNRGYIVKTGFKYGSEFRLYERGKSPGNGHSDFV
VRVLTENQDISVLNFSSYVRVAHGVNKKLLLAVVDDEQDITYYNVEWTRP
NT seq
513 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgagttaattggagaactagtaataatcaaagataaaaaagcagtggcttta
agtgagaaaagccactacggtaaatacaaccaggaagaactgcaactttcattaatagag
gccttttatctccaggaaaagggaaaaataaatattttaaaccgtgaaaatcagggaaaa
atcatctcaccccaccagatgaggaagattatccagaatgaagacctcttttaccgctac
atcgtttaccaggacctcagaaaccgaggatatatagttaaaactggtttcaaatatggt
tctgaatttagattatacgaaagaggtaaatcccctggtaatggtcattccgattttgtg
gtgagggttttaactgaaaatcaggatatatccgtgcttaatttttccagctatgttcgc
gtggcccatggagttaacaagaaactcctgctggcagtggtggatgatgaacaggacata
acctactacaatgttgagtggacccgaccataa
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