Mycolicibacterium flavescens: NCTC10271_04212
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Entry
NCTC10271_04212 CDS
T07767
Symbol
recD
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
mflv
Mycolicibacterium flavescens
Pathway
mflv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
NCTC10271_04212 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflv03400
]
NCTC10271_04212 (recD)
Enzymes [BR:
mflv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
NCTC10271_04212 (recD)
DNA repair and recombination proteins [BR:
mflv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
NCTC10271_04212 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
AAA_11
Helicase_RecD
AAA_22
UvrD-helicase
SH3_13
PhoH
AAA_16
T2SSE
nSTAND3
AAA_5
AAA_29
AAA_28
SLFN-g3_helicase
AAA_7
NTPase_1
SRP54
Herpes_Helicase
CbiA
AAA_25
Mg_chelatase
RecD_N
MukB
AAA
AAA_23
Motif
Other DBs
NCBI-ProteinID:
VEG45281
LinkDB
All DBs
Position
1:4336990..4338678
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AA seq
562 aa
AA seq
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MTGVEWRRAISATGLLRTFTDAEVLDASDVHVAQRLCDLVKAPDEQVSLAIALVVRALRN
GSVCLNLRTVEQQVGIDGLPWPAVDDWFGAIAAHPLTGRPPALHIDGDLLYLDRYWLEEQ
QVCGDILSMTSGRPTPPLPDLDRLFPPGFEEQRAAAKLALSQGLTVLTGGPGTGKTTTVA
RLLALLTSGTRLRIALAAPTGKAAARLQEAVQLEVDKLDSTDRQALSGLHATTLHRLLGS
RPDTSARFRHNRHNRLPHDVIVVDETSMVSLTMMARLLEAVRPDARLVLVGDPDQLASVE
AGAVLADLVDGLGQDRIAELKTSHRFGESIGRLATAIRTGDAETVIDVLRSGGDHIEWVD
TEEPSEQLRKVLVPNAIALRTAAVLGDGDAALGILAEHRLLCAHRRGPFGVRYWNHQVER
WLSELTGEPIWSTWYAGRPVLVTANDYGLNLYNGDTGVTVLRDGVLRAVIAGTERLEFAT
SRLAEVDTMHAMTIHKSQGSQADEVTVLLPPEGSRLLSRELFYTAVTRAKEKIRVVGPEA
SVRAAVQRRAVRASGLARRLRP
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaccggcgtggagtggcggcgggcgatcagcgccaccgggctgctgcgcaccttcacc
gacgccgaagttctcgatgcgtcggatgtacatgttgcacaacggctctgcgatctcgtc
aaggcgcccgacgagcaggtgtcgcttgcgatcgcgctcgtggtgcgcgcactgcgcaac
gggtcggtatgcctgaacctgcgcaccgtcgagcagcaggtcggcatcgacggactgccg
tggcccgccgtcgacgattggttcggcgccatcgccgcgcacccgctgaccggccggcca
ccggcgctgcacatcgacggagacctgctgtacctcgaccggtactggctcgaggagcag
caggtgtgcggcgacatcctgtcgatgacctccggcaggcccacccctccgttgccggat
ctggacaggctctttccgccgggcttcgaggagcagcgcgccgccgcgaaactggcgctg
tcgcagggtctgacggtgctcacgggcgggccgggcacagggaaaaccacgacggtcgcg
cgcctgctcgcgctcctcacgagtgggacacggctgcggatcgcgctggcggcgccgacg
gggaaggcggcggcgcgtctgcaggaggccgtgcaactggaggtggacaaactcgactcc
accgaccgccaagcgttgtccgggctgcacgcgacgacgttgcaccgcctgctcgggagc
cgcccggacacgtcggcgcggttccggcacaaccgccacaacaggttgccgcacgacgtg
atcgtcgtcgacgagacgtcgatggtgtcgctgacgatgatggcgcgactgctggaggcg
gtgcggccggacgcccggctcgtcctggtcggcgacccggaccagttggcctcggtagag
gccggtgcggtcctcgccgacctggtcgacggtctcggacaggaccggatcgcggagttg
aagacgtcgcaccggttcggcgagtcgatcgggcggctggccaccgcgatccgcaccggc
gacgcggagacggtcatcgacgtgttgcgctcgggcggagaccacatcgaatgggtggac
accgaggaaccgtccgagcagctccgtaaggtgttggtgccaaacgcgattgcgctgcga
acggcggcggttcttggtgacggcgacgcggcgttgggcatcttggccgaacaccggttg
ctgtgcgcgcatcgccgcggcccgttcggggtgcggtactggaaccatcaggtggagcgg
tggctgtcggagttgaccggcgagccgatctggtcgacgtggtacgccgggcggccggtg
ttggtgaccgcgaacgactacgggctcaacctctacaacggcgacacgggtgtgacggtg
ctgcgcgacggggtgctgcgcgcggttatcgccggcacggaacggttggagttcgcgacc
agccggctcgccgaggtcgacacgatgcatgcgatgacgattcacaagtcgcagggcagc
caggccgacgaggtcacagtgctgctgccgcccgagggttcgcggctgctcagccgcgag
ttgttctacaccgcggtgaccagggcgaaagagaagatccgggtcgtcggcccggaggcc
tcggtgcgggccgccgtgcagcgccgggccgtgcgcgcatcgggcctggcccgccgcctg
cgcccctga
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