Magnetococcus marinus: Mmc1_1621
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Entry
Mmc1_1621 CDS
T00427
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
mgm
Magnetococcus marinus
Pathway
mgm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
mgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Mmc1_1621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgm03400
]
Mmc1_1621
Enzymes [BR:
mgm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Mmc1_1621
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Mmc1_1621
DNA repair and recombination proteins [BR:
mgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Mmc1_1621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
zf-TFIIB
OrfB_Zn_ribbon
DZR
zinc-ribbons_6
RNHCP
Nudix_N_2
Zn_ribbon_SprT
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ABK44130
UniProt:
A0L837
LinkDB
All DBs
Position
2007535..2008362
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AA seq
275 aa
AA seq
DB search
MPELPEVETTRRGIEPALVGKRLCGVVVRQPQLRWPIPVKTLEKELVGQVIQQVARRAKY
LLWRCPQGTLLVHLGMSGSLRIVPEHTPPAKHDHVDWVMEGGQMVRLHDPRRFGAVVWIP
VTSPEEEHPLLAKLGPEPLHRSLNGRYLHQGSRGRQLAVKNYIMDQSVVVGVGNIYASEA
LFRAGIAPAQAAGKVGLGRYRALACAIKAVLGDSIEQGGTTLRDFIGSDGKPGYFVQSLN
VYGRAGKACPKCGTTIEKQVLGQRSSYYCPQCQRA
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaggttgaaaccacccgccggggtattgaacccgccctggtgggt
aaacgcctgtgtggcgtggtggtgcgtcagccccaactgcgctggcccataccggttaaa
accctggaaaaagagttggtggggcaggtgatccaacaagtggcccggcgggctaaatat
cttttatggcgctgcccgcaaggaaccttgctggttcacttgggcatgtctggttctttg
cgtattgtgcccgagcataccccccccgccaaacatgaccatgtggattgggtgatggaa
ggcgggcagatggtgcgcttgcatgatccccggcgttttggcgcggtagtgtggataccg
gtaaccagcccagaagaagaacatcccctgctggccaaattggggccagaacccctgcat
cgcagcctcaatggtcgttacctccaccagggttcccgtgggcgtcaactggcagtaaaa
aattatattatggatcaaagcgtggtggtgggggtcggcaacatctacgccagcgaggcg
ctgtttcgcgccggcattgctcccgctcaagccgcaggtaaagtgggcttaggacgctac
cgggcgctggcctgtgccattaaagcggtgttgggggattcaatcgaacagggtgggacc
acgctgcgggattttattggcagtgatggcaaaccgggctactttgtacaatccctcaat
gtctatgggcgtgcgggtaaagcgtgcccaaaatgtggcaccaccatagaaaaacaggta
ctggggcagcgctccagctattattgcccccaatgccagcgggcctag
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