Mycolicibacter hiberniae: MHIB_03700
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Entry
MHIB_03700 CDS
T06801
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mhib
Mycolicibacter hiberniae
Pathway
mhib03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mhib00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MHIB_03700 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mhib03400
]
MHIB_03700 (ligD)
Enzymes [BR:
mhib01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MHIB_03700 (ligD)
DNA repair and recombination proteins [BR:
mhib03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MHIB_03700 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBZ21952
UniProt:
A0A7I7WXY4
LinkDB
All DBs
Position
379463..381754
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AA seq
763 aa
AA seq
DB search
MAAESVTTRVTLTNAEKVLYPATGTTKAEVFDYYTRIAEVMLPHIAGRPATRKRWPNGVE
QSSFFEKQLASSAPGWLARADIQHRSGITTYPVIEDLDGLAWIAQQAALEVHVPQWRFEA
QWTHGGRVFKPGPATRLVFDLDPGEGVTMSQLAEVARAVRELMAELSLPTFPLTSGSKGV
HVYAALDPPVSSAGAVVLAKRVAQQLESAMPTLVTATMAKKLRAGKVFLDWSQNNASKTT
IAPYSLRGRDHPTVAAPRTWAELDDPDLRQLRYDEVLQRVARDGDLLAALDRALPAQDRL
DVYRSKRDARRTPEPVPATAPVPGGGNSFVIQEHHARRLHYDFRLERDGVLVSWAVPKNL
PETTAVNHLAVRTEDHPLEYGSFEGTIPKGEYGAGTVRIWDSGTYVTEKFEDPAGEGAEK
GEVIVVLSGSRISGRYALIRTAGDQWLAHRMKDQQAFTFSELAPMLATHGSVTRLDPNQW
AFEGKWDGYRLLVEAENGEVRLRARSGRDVTAEYPQLPFPAEDLAEHHVVLDGELVALDD
RGVPSFAAMQNSARAARLEFWAFDLLYLDGRPLLRVAYRDRRRLLETLAQGTGLVVKELL
TPDGAKALEQSGRLGWEGVIAKRWDSPYRPGRRSPAWIKDKHWQTQEVVIGGWRAGEGGR
GGGIGSLLMGVPEADGLRFVGRVGTGFTERQLAALKEMLEPLRTGESPFREPLARPDAKG
VTFVEPTVVAEVRYSERTADGRLRQPSWRGLRPDKTPGEVEWE
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgagtccgtcacgacacgggtcacgctgaccaacgccgaaaaggtgctctac
cccgcgacgggcaccaccaaggccgaggtcttcgactactacacccgcatcgccgaggtg
atgctgccgcacatcgcaggacgcccggcgacccgcaaacgctggcccaacggtgtcgag
cagagctccttcttcgaaaagcagctggcgtcctcagcgccgggctggctggctcgcgcc
gacattcagcatcgctccggcatcaccacctatccggtgatcgaggacctcgacgggctg
gcctggatcgcccaacaggccgcgctggaggtgcacgtcccgcagtggcggttcgaagcg
cagtggacgcacggcggccgcgtgttcaagcccggcccggcaacgcgactggtcttcgac
ttggaccccggcgagggcgtcaccatgagtcagctcgccgaggtggcgcgcgccgtgcgt
gagctgatggccgagttgagcctgcccacgttccccctcaccagcggcagcaagggagtg
cacgtctacgccgccctggacccgccggtgagcagcgccggtgcggttgtcttggccaaa
cgcgttgcgcagcaacttgaaagcgcgatgcccacgctcgtcaccgcgaccatggccaag
aagcttcgtgctgggaaggtgttcctggactggagccagaacaacgcctccaagaccacc
atcgccccgtattcgctgcgcggccgcgatcacccgacggttgcggcccccagaacctgg
gcggagctcgacgaccccgacctgcggcagctgcgctatgacgaggtgctgcaacgcgtc
gcccgtgacggcgatctgctggccgccctggaccgcgccctgccggcccaggatcggctt
gacgtctaccggtccaagcgcgatgcgcgccggacccccgaaccggtgccggccacggcg
ccggtgccgggcggcggcaacagcttcgtcatccaggagcaccacgcgcgccggctgcat
tacgacttccggctggagcgcgacggcgtgctggtgagttgggcggtgcccaagaatctt
ccggagacgacagcggtcaaccatctcgcggtccgcaccgaggatcatcccctggagtac
ggcagtttcgaaggcacgatccccaagggcgagtacggtgccggcacggtgcgcatctgg
gattcgggcacgtatgtgaccgagaagttcgaggacccggccggggaaggggccgaaaaa
ggagaggtgatcgtcgtgctgtccggcagccggatctccgggcgctacgcgctgatccgc
accgccggcgaccagtggctggcgcaccggatgaaagaccagcaggcattcacgttcagc
gaactggcccccatgctggccacgcacggctcggtgacccggctggacccgaatcagtgg
gccttcgaaggcaaatgggacggctaccggctactggtcgaagccgagaacggcgaggtc
cggttgcgtgcccgcagcggccgtgacgtcaccgccgagtacccgcaactgccgtttccg
gccgaggacctggccgaacaccacgtcgtcctcgatggtgaactggtcgcgctcgacgac
cgcggcgtccccagcttcgccgcgatgcagaacagcgcccgcgccgctcgcctggagttc
tgggccttcgacctgctctatctcgacggccgcccgctgcttcgcgtggcctaccgggat
cggcgacgcctgttggaaacactcgcccagggaacaggtctcgtggtcaaggagctcctg
acacccgatggcgccaaggccctcgagcagtcgggccgcctcggctgggagggcgtgatc
gccaagagatgggattcgccgtatcggccgggtcgccgatctccggcctggatcaaagac
aagcattggcagacccaggaggtggtgatcggcggctggcgggcaggggagggcggccgc
ggcggcggaatcggatcgctgttgatgggggtgcccgaagccgacggcctgcgcttcgtg
ggacgggtcggcacggggttcaccgagcgtcagctggcggcattgaaggagatgctggag
ccgttgcgcaccggcgaatccccgtttcgggaacccctggcgcggcccgacgcgaaaggc
gtcaccttcgtcgaacccaccgtggtggccgaggtgcgctacagcgaacgcacggccgat
ggccggctccgccagcccagctggcgcgggctgcgtcccgacaagacccccggcgaggtg
gagtgggagtga
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