KEGG   Microbacterium hominis: CXR34_07730Help
Entry
CXR34_07730       CDS       T05238                                 

Definition
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mhos  Microbacterium hominis
Pathway
mhos03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mhos00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CXR34_07730
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mhos03400]
    CXR34_07730
Enzymes [BR:mhos01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CXR34_07730
DNA repair and recombination proteins [BR:mhos03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CXR34_07730
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase DNA_primase_S
Motif
Other DBs
NCBI-ProteinID: AUG29359
UniProt: A0A2K9DEK7
LinkDB All DBs
Position
complement(1650001..1652427)
Genome map
AA seq 808 aa AA seqDB search
MAQAAQVVEVGGRRLRLSNLDKVLYPATGTTKAEVIDYYSRIAPLLLPHLAGRPVTRLRW
PDGTGEPPFFAKDLEAGAPDWLRRRAIDHSGGAKDYPLIDDVAGLVYLAQVASLELHTPQ
WRFDGGGRGSPDRLVLDLDPGPGVGLPECAEVARRARGILADMGMDPLPVTSGSKGIHLY
APLDATRTSDEISAFARELARALEADDPDLVVSAMSKNARPGKVFVDWSQNNAAKTTIAP
YSLRGRAEPTVAAPRTWAELDDPDLRHLLFDEVLARAASDGDLLAPLAPVAPDPLSSYFA
KRTPSATPEPFPTPANRHALAEPPHPGPAGHSGSHESWRFVIQEHHASRLHFDLRLEHDG
VLVSWAVPRGIPATPDRNHLAVMTEPHPLEYLTFAGEIPAGEYGAGTMTVWDSGTFTVEK
WRDDEVIATLSGRPDGPLGRVRIALIRTAGSGEKSQWLLHRTKDAATPPVRAARAGHRAP
ARTASGPDAPMLAVSTTPALAAAAARRWGDLPWVEFKWDGIRAVGTWDGSRLRLRARSGA
DITDRYPELTSGDVGFGPRPAVVDGEIVARDAAGRPSFTRLQSRMHVTSAPEIAREAQRI
PVDYFLFDVLRVGDEDVTGRPLRERREILETIAADAIAAVAVPPVADDVSDALTAAAELH
LEGVVVKDPRSPYRRGARSEEWLKVKLTAMQEVVIGGIRPGKGGRRGSIGSLLLGIPDED
GLHYVGRVGTGFGDRELSRLAALLEPLRTDSSPLLGVPVADASDALWVRPELVGEVEYAE
FTPSGTLRHARWRGLRPDVDPADVRRDD
NT seq 2427 nt NT seq  +upstreamnt  +downstreamnt
atggcacaggcagcacaggtcgtcgaggtcggcggacgacgcctccggctgagcaacctc
gacaaggtgctgtaccccgcgaccggcaccaccaaggccgaggtcatcgactactactcg
cgtatcgctccgctcctgctcccccatctcgcgggccgacccgtcacgcggctgcggtgg
cccgacggcaccggcgagccccccttcttcgcgaaagacctggaggccggcgcacccgac
tggctccggcgccgcgcgatcgatcactccggcggagccaaggactacccgctgatcgac
gacgtcgcgggcctggtgtacctcgcgcaggtcgcgagcctcgagctgcacacgccgcaa
tggcgcttcgacggcggcggccgcggatcgcccgaccggctcgtgctcgacctcgacccc
ggccccggcgtcgggctcccggagtgcgccgaggtggcccgccgggcccgcggcatcctg
gcggacatgggcatggacccgctgccggtgaccagcgggtcgaagggcatccacctgtac
gcacccctggacgcgacgcgcacgagcgacgagatctcggcgttcgcgcgcgagctggca
cgcgcgttggaagccgacgatcccgatctcgtcgtgagcgcgatgagcaagaatgcgcgc
cccggcaaggtgttcgtcgactggagccagaacaacgccgccaagaccacgatcgcgccc
tactcgctccgcggacgcgcggagccgacggtcgccgccccccgcacctgggccgagctc
gacgatcccgacctgcggcacctgctgttcgacgaggtgctcgcccgcgccgcctccgac
ggcgacctgctcgcgcccctggcgcccgtcgcgcccgatcccctctcctcctacttcgcg
aagcgcaccccctccgccacgcccgaaccctttcccacgcccgcgaaccgacacgccctg
gccgagccgccacaccccggcccggcggggcatagcggctcgcacgagtcgtggcggttc
gtgatccaggagcatcacgcgtcacgtctgcacttcgacctccggttggagcacgacggg
gtgctcgtcagctgggccgtgccgcgcggcatcccggcgacccccgatcgcaaccacctc
gcggtcatgaccgagccgcaccccctcgagtacctcaccttcgccggcgagatccccgcc
ggcgagtacggcgcgggaacgatgaccgtctgggactccggcacgttcacggtggagaag
tggcgcgacgacgaggtgatcgcgaccctctccggccggccggacggcccgctcggacgt
gtgcggatcgccctgatccgcaccgccggctcgggtgagaagtcccagtggctcctgcac
cgcacgaaggatgccgcgacgccgccggtccgcgccgcgcgcgccgggcatcgtgcgccc
gcgcgaacggcgagcgggcccgacgccccgatgctcgcggtgtcgacgacgccggcgctc
gccgcggcggccgcgcgaaggtggggcgacctcccctgggtcgagttcaagtgggacggc
atccgcgccgtcggcacgtgggacggcagccgcctgcggttgcgagcacgcagcggcgcc
gacatcaccgaccgctaccccgaactcacctccggagacgtcggcttcggcccccgcccg
gcggtcgtcgacggcgagatcgtcgcccgggatgctgcgggccgcccgagcttcacgcgg
ctgcagtcgcgcatgcacgtgacctcggcgccggagatcgcgcgggaggcgcagcgcatc
cccgtcgactacttcctcttcgacgtgctgcgcgtcggcgacgaggacgtcaccgggcgt
cccctgcgcgaacgccgcgagatcctcgagacgatcgcggccgacgccatcgccgccgtc
gccgtgccgccggtcgcggacgacgtgtccgatgcgctgacggccgccgcggagctgcac
ctggagggtgtggtcgtcaaggatcctcggtctccctaccgtcgcggagcccgatccgag
gagtggctcaaggtcaagctgacggccatgcaggaggtcgtgatcggcggcatccgcccc
gggaaagggggacggcgcggcagtatcggatcgctgctgctcggcatccccgacgaggac
ggcctgcactacgtcggacgcgtcggcaccggattcggcgaccgcgagctgagccggctc
gcggcactgctcgagccgctgcgcaccgactcctcgcccctgctcggcgtgccggtcgcg
gacgcctccgatgcgctgtgggtgcggccggagctcgtcggcgaagtggagtacgcggag
ttcacgccgagcggcaccctgcgccacgcccggtggcgcggtctgcgtccggatgtggat
cccgcagacgtgcgccgggacgactga

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