Mesomycoplasma hyopneumoniae 7448: MHP7448_0616
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Entry
MHP7448_0616 CDS
T00264
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mhp
Mesomycoplasma hyopneumoniae 7448
Pathway
mhp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mhp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MHP7448_0616 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mhp03021
]
MHP7448_0616 (rpoC)
03400 DNA repair and recombination proteins [BR:
mhp03400
]
MHP7448_0616 (rpoC)
Enzymes [BR:
mhp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MHP7448_0616 (rpoC)
Transcription machinery [BR:
mhp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MHP7448_0616 (rpoC)
DNA repair and recombination proteins [BR:
mhp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MHP7448_0616 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AAZ53979
LNCC_Brazil:
MHP0616
UniProt:
Q4A7B0
LinkDB
All DBs
Position
complement(817372..821610)
Genome browser
AA seq
1412 aa
AA seq
DB search
MNTKVSRQYAKISENSIQKISLALATPEDVLEWSRGEVHRPETINYKTFKPERGGLFDEL
IFGPLVDYKCSVCGRKYRKSNENQLCIATKECKIRGSRILSKMARRYSMGHIALNAPILH
FWFFKIDHSIIAKLLGLKVFEGNSKVPTTITKTAIENLIYYKSHIVLETGGLKSLEQNKI
IDISEAGLIYKNALIEIIEFYPPGSEEHNALAESISELADVTSSKIGREYGVDYYELNEI
IEEFSSARIATGALAIEYLLDKIDLRAEKAAVEAELAGVQKQIYKNKKIILKNQKRDKLY
KRLQVINAFINSGQDPKMMIIRNLPVIPADLRPLVQLDGSRHSTSDCNELYRRIIIRNNR
LKRWKAAHAPVIIIQNEMRMLQEAVDALIDNQKKSTNQVTTKEGRPLKSISDALTGKKGR
FRQNLLGKRVDYSGRSVIVVGPKLKMHQAGLPRKMAAVLFEPWIIRNLIQEKKVGSIKMA
RKMIEEENPIIWPHVAKVIQNKPIILNRAPTLHRLSIQAFEPVLVRAKAIQLHPLVTAGF
NADFDGDQMAVHIPISPEAIRETQELMFADKNILGPKDGEPIVNPSQDMVLGLYYLSQEK
AGAKGEGSFFSTYEAMLKAYEFRSVELHARVVLPFEQVKPFIAKTMRGHLISTVGKFILN
NIFPANFPFIFDDNVDELELNYPSQIKKYVLPYGTNFREYIQNLKVNEPLNKKAIAKIVR
QIFDTYDGLLAKEDIATVIDQLDFGNYQNCVLLYEKLRDYKKQKLPVPHLSKLSEFTIFE
YSQLYKQLQQNGPVESYRVLEDHEKAELLEKIWFKYNNMVCSILDKIKDLGFHYSTLSGT
SIAISDIKMAPKKHEFIKEGENYINKLNTFYAKGLITDDERYVLAIAKWTQIKNDIQEDL
NQSIKDDNQNSLVMMMKSGARGNISNFVQLAGMRGLMANNVKALKVDAENERVVRSIVEV
PVKSSFLEGLTSFEFYSSTHGARKGLTDTALNTAKSGYLTRRLVDVAQNIVVVAEDCFSD
FGFVVKDIIDTKTNTIIVPLLERIEGRFLNKDVYDSRGIKLASAGTMVDLQTAKKIVAAG
IKKVEIRSILSCHIKNSVCKKCYGKDLATNRLVSIGEAVGIIAAQSIGEPGTQLTMRTFH
TGGVANVEDITGGFTRLIELIDSHEHPWGKPAKISPYYGIITKISDLAEKNAANKGFLIT
IEYKTSKNEKAEHIIRIEQSQKLRVKVGDKVIPGQKLVEGPIILKELLAVSDARTLQNYL
LKEIQRIYRMQGISISDKYIEIIIRQMLSKVQIIENGDSNFFIGSIVDISDYQEVNGQLI
SQNKNPAFGNVIVKGAKQIPLLSNSFLAAASYQETSKILVHSVISSQIDKLEGLKENIIV
GHKIPAGTNSNYEPKSKFDIRNPLSFFMKNNR
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaaagtttcgcgccaatatgcaaagatttccgagaattcaattcagaaaatt
tcccttgctttagcaactcccgaggatgtccttgaatgatcaagaggagaggttcatcgt
cccgaaacgattaattataaaacttttaaacccgagcgcggcggtctttttgatgagtta
atttttggtcctcttgttgattataaatgttcagtttgtggaaggaaatatcggaaatca
aacgagaatcagctatgcatcgctacaaaagaatgtaaaattcgtggatcacgaatttta
tcaaaaatggcccggcgttattcaatgggtcatattgctttaaatgccccgattttacat
ttttgattttttaagatcgaccattcaattattgccaaattacttggccttaaagttttt
gagggtaattctaaagttcctaccacaatcactaaaaccgcaattgaaaatctaatttat
tataaatcacatattgtccttgaaactggggggcttaaatctttagaacaaaacaaaatc
attgacatttccgaagccggcttaatttataaaaacgccttaattgaaataattgaattt
tatcctcctggaagcgaggaacataatgccttagcagagtcaatttctgaattagccgat
gtaacttcaagtaaaatcggccgtgaatatggggttgattattatgaacttaatgaaata
attgaagaattttcaagtgctcgaattgcaacaggagcgctcgcgattgaatatttgctt
gataaaattgatcttagagctgaaaaagcggcagttgaagctgaacttgccggggttcag
aaacaaatttataaaaataagaaaattattcttaaaaatcaaaaacgagataaactttat
aaaagactgcaagtaattaatgcttttattaactctggtcaagatccaaaaatgatgata
attcgcaatcttccggtaattccagctgatttacgtccgttggttcaactagatggctcc
cgtcattcaacaagtgattgcaatgaattataccgcagaatcattattcgaaataaccgt
ctaaaaagatgaaaagctgctcatgctcctgttattattatccaaaatgaaatgcgaatg
ctccaagaagccgttgatgctttaattgataatcaaaaaaaatcaacaaatcaagtaaca
accaaagaaggccgtccgcttaagtcaatttctgatgctttaactggaaaaaaaggaaga
tttcgtcaaaatcttttaggaaaaagggttgattattctggaagatcagtaattgttgtt
ggcccgaaattaaaaatgcatcaagccggacttccccggaaaatggctgctgttcttttt
gaaccctgaattattcgcaatttaattcaggaaaaaaaagtaggctcaatcaaaatggca
aggaaaatgattgaagaagaaaacccaattatttgacctcatgttgccaaagtcatccaa
aataaaccaataattttaaatcgggctccaactttgcaccgcctttcaattcaagctttt
gaacctgttttagtcagagccaaagcgattcaattacatccgcttgtaaccgccggattt
aatgctgattttgatggtgatcaaatggctgttcatattccaatttctcctgaagctatc
cgtgaaactcaagaattaatgtttgcagataagaacattttaggcccaaaagacggagaa
ccaattgttaatccttctcaggatatggtgctcggactttattatctatcccaggaaaaa
gccggagcaaaaggcgaaggatctttcttttcaacttatgaagcgatgctaaaagcatat
gaattccgaagtgttgagcttcatgcccgggttgttttaccttttgagcaggtaaaacct
tttattgccaaaactatgcggggacatttaatttcaacggtgggaaaatttattcttaat
aacattttcccggcaaattttccttttatttttgatgataatgttgatgaattagaacta
aattatcctagtcaaatcaaaaaatatgtccttccttatggaacaaattttcgcgagtat
atccaaaatttaaaggttaatgaacctttaaataaaaaagcgattgccaagattgtccgc
caaatttttgatacttatgatggtcttttagcaaaagaagatattgcaactgtaattgat
caacttgattttggcaattatcaaaattgcgttttactctatgaaaaattacgtgactat
aaaaaacaaaaattaccagttccccatctttcaaaattaagtgaatttacaatttttgaa
tattcacagttatataaacaacttcaacaaaatggtccagttgagtcttatcgtgtccta
gaagatcatgaaaaagctgaacttttagaaaaaatttggttcaaatataataacatggtt
tgttcaattcttgataaaattaaggatttaggatttcattattcaactctttcgggaact
tcaattgcgatttcagatatcaaaatggcgcccaaaaaacatgaatttatcaaagaaggt
gaaaattatattaataaattaaacactttttatgcaaaaggtttaatcaccgatgatgaa
agatatgttttagcaatcgctaaatgaacgcagatcaaaaatgatatccaagaagattta
aatcagtcaattaaagatgataatcaaaattcacttgtaatgatgatgaaatcaggggct
cgtggtaatatttctaactttgttcaacttgcaggaatgcgaggtttgatggcaaataat
gttaaagcccttaaagttgatgctgaaaatgaaagggtagttcgttcaattgttgaagtt
ccagttaaatcatcttttcttgaaggtcttacctcttttgaattttattcttcaacccat
ggagctagaaaaggacttacagatactgcacttaatacggcaaaatcgggatatttaact
cgtcggctcgtcgatgttgcccaaaatattgtcgttgttgccgaagattgtttttctgat
tttggctttgtcgtcaaagatataattgatactaaaacaaatacgataattgttccttta
ctagaaagaatcgaaggtcgctttttaaataaagatgtctatgactcccggggaattaaa
ttagcaagcgcgggcactatggttgatttacaaacagcaaaaaaaattgttgctgccgga
attaaaaaagtcgagattcgttcaattttatcctgccatatcaaaaatagtgtctgcaaa
aaatgttatgggaaagatttagcaacaaatcgacttgtttcaatcggcgaagccgtcgga
attatcgctgctcaatcgatcggagaacctggaacgcagttaacaatgcgtactttccat
accggtggggttgctaatgttgaagatattacagggggatttacccgtttaattgaacta
attgactcgcatgagcatccttgaggtaagccagcaaaaatttcgccttattatggtatt
ataaccaaaatttctgatcttgccgaaaaaaatgcggcaaataaaggatttttaattact
atcgagtacaaaacaagcaaaaatgaaaaagctgaacatattatacgtattgagcaaagt
caaaaattacgtgtaaaagtcggagataaagtcattccgggacaaaaattggtcgaagga
ccaattattctaaaagaattactagctgtctctgatgctagaacactacaaaattaccta
ttaaaagaaattcaaagaatttatcgaatgcaaggaatttcgatttcagataaatacatt
gagatcataatcaggcagatgctttcaaaagttcagatcattgaaaacggtgattctaat
ttctttatcggatcgattgttgatattagtgattatcaggaagttaatggtcaactgatc
tcccagaataaaaatccggcttttgggaatgtaatagtaaaaggagcaaaacaaattcct
cttctttcaaattcatttttagccgccgcgagttatcaggaaacctcaaaaatacttgtt
cattcagtaatttcttcacagatcgataaacttgaagggcttaaagaaaatattatcgtc
gggcataaaattccagccggaaccaattcaaattatgagccaaagtccaaatttgatatc
cgtaatccacttagtttctttatgaagaataaccgttag
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