Microbulbifer hydrolyticus: GTQ55_10090
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Entry
GTQ55_10090 CDS
T06404
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mhyd
Microbulbifer hydrolyticus
Brite
KEGG Orthology (KO) [BR:
mhyd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mhyd03016
]
GTQ55_10090
Enzymes [BR:
mhyd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GTQ55_10090
Transfer RNA biogenesis [BR:
mhyd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GTQ55_10090
Prokaryotic type
tRNA splicing ligases
GTQ55_10090
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Gam
Motif
Other DBs
NCBI-ProteinID:
QHQ39301
UniProt:
A0A6P1TBX5
LinkDB
All DBs
Position
complement(2396712..2397920)
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AA seq
402 aa
AA seq
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MPVKMVLNGNAPPGTVPVKIYTEDVENAALQQLKNIAQLPIIHSHVAAMPDVHMGIGATV
GSVIPTVGAIIPAAVGVDIGCGMNAVRTSLHANQLPDNLKPLREAIERRVPVGFARHKRV
SAREAAAQTLASGADMLFAKHPQLLKKLRNPQETWVTQVGTLGGGNHFIEICLDENNRVW
VMLHSGSRGIGNAIGQHFIQLAKRDMEGHMHNLPDRDLAYFSEGNAHFDDYIEAVHWAQE
YARVNRQEMMKLVVGVLQQHLPPFTLESEAINCHHNYVVREKHFGRDVFVTRKGAISAQK
DQLGIIPGSMGARSYIVRGLGNTESFCSCAHGAGRRMSRTAARKRFTRDDLEAQTRGVQC
RKDKGVIDEIPGAYKDIDQVMENQRDLVDVVHTLKQVICVKG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtaaaaatggtacttaacggcaatgcaccacccggcaccgtgccggtcaagatt
tacacggaagacgtggaaaacgcggcattgcaacaactgaagaatatcgcccagctgccc
atcatccattcccatgtggcggcgatgccggatgtccatatggggattggtgccacggtg
ggatctgttatcccgaccgtcggtgccattattccggcggcggtgggtgtggatatcggc
tgtggcatgaatgcggtgcgcacctcgctacatgccaaccagctgccggataacctgaag
ccgctgcgcgaagcgatcgagcggcgtgtgccggtcgggtttgcccgccacaagcgggtg
agcgcccgcgaagcggcggcgcagacgctggcttctggtgccgacatgctgtttgcgaaa
cacccgcaactgctgaaaaaactgcgcaatccgcaggaaacctgggtcacccaggtgggc
acgttgggtggtggcaatcactttatcgagatctgtctcgacgagaacaaccgggtatgg
gtgatgctgcactccggcagtcgtggcattggcaatgccattggtcagcatttcatccag
ctggcgaagcgggatatggaggggcatatgcacaaccttccggaccgcgacctggcgtat
ttcagtgagggcaatgcccatttcgatgactacatcgaggcggtgcactgggcgcaggaa
tatgcacgggtaaaccgtcaggagatgatgaaactggttgtgggtgtgctgcagcagcac
ctgccgcccttcacgctggagagcgaagcgatcaactgccaccacaattatgtggtgcgg
gagaagcactttggccgcgatgtgtttgtcacccgcaagggggcgatcagcgcgcagaaa
gaccagctgggtattattcccggctccatgggcgcgcgttcatacatcgtgcgcggcctc
ggtaataccgagtctttctgctcctgtgcccacggggcagggcggcgtatgagtcgcacc
gcggcgcgcaaacgtttcacgcgggatgacctggaagcccagactcgcggtgtgcagtgc
cgtaaggacaagggggtgatcgatgagattcccggagcttacaaggacatcgatcaggtg
atggaaaaccagcgtgacctggtggatgtagtgcataccctcaagcaggtaatctgcgta
aagggttga
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