Methanomethylovorans hollandica: Metho_1178
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Entry
Metho_1178 CDS
T02418
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mhz
Methanomethylovorans hollandica
Pathway
mhz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mhz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Metho_1178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mhz03019
]
Metho_1178
03009 Ribosome biogenesis [BR:
mhz03009
]
Metho_1178
Enzymes [BR:
mhz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Metho_1178
Messenger RNA biogenesis [BR:
mhz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Metho_1178
Ribosome biogenesis [BR:
mhz03009
]
Prokaryotic type
rRNA helicases
Metho_1178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
AAA_30
UTP25
Helicase_RecD
AAA_22
Flavi_DEAD
bCoV_SUD_C
Motif
Other DBs
NCBI-ProteinID:
AGB49410
UniProt:
L0KXJ3
LinkDB
All DBs
Position
1185286..1186410
Genome browser
AA seq
374 aa
AA seq
DB search
MDKITFNDLNLSSDIKKAIEHMGFLHPTPIQIQAIPHILEGKDIIGQAETGTGKTAAFGI
PALEMVDITQKRVQVLVLCPTRELANQVAEEINLLSRYKDIKVQSIYGGQSIERQIRTLK
KGVHMVIGTPGRVMDHLQRNTLKLDNLKMLVLDEADKMLDMGFREDIEVILTRAPERRQT
ILFSATMPKPIMKLTTQYQHEPLLIKTQQKNINVPQIEQFYFNTKGRSKHDILCRVIDNY
EMKSSLVFCNTKKGVDELVGTLRRRGYLADGLHGDMGQRQRDEVMSGFRNGTIETLVATD
VASRGIDVKNIEAVFNYDIPQDTESYIHRIGRTGRAGKEGRAFTFAASREVYRIKNIQKY
TNTVIRCKELPAIQ
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggataaaattacatttaacgatctgaatttatcttcagatatcaagaaagcaattgaa
cacatgggattcttacatcctactcccatacagatacaggccattcctcatatacttgaa
ggaaaggacatcataggtcaggcagaaacaggcacaggtaagaccgcagcatttggaata
cctgcactggaaatggtggatatcacacaaaagagagtacaagtccttgtactttgccca
acaagagaacttgcaaaccaggttgctgaagagataaacctgctttcaagatataaggat
ataaaggtccaatctatatatggcggtcaatccattgaaaggcagatccggactttaaag
aaaggagttcatatggtcataggtactccgggaagagtaatggatcatcttcagcgtaac
acgctcaaacttgacaacttaaaaatgcttgtgctggatgaagcggacaagatgctggat
atgggattccgagaggatatagaagttattctgaccagagctcctgaaagaagacaaacg
atcctcttttctgcaactatgccaaagcccattatgaaactaacaacacagtatcagcat
gaacctttgttaattaagacccagcagaagaacatcaatgttcctcagatagaacagttc
tattttaacacaaagggtagatcaaagcacgatatcctgtgccgtgtcatagataactat
gaaatgaagtcttctcttgtattctgcaacaccaaaaaaggtgtggatgaactggtaggt
actctcagaagaagaggatacctggctgatgggcttcatggagatatggggcagaggcaa
agggatgaagtaatgtctggtttcaggaacggaactatagaaactcttgtggctacagat
gtggcttcccgaggtatagatgtgaagaacatcgaagctgtgttcaattatgatattcca
caggataccgaatcctatattcatagaattggcaggaccggaagggccggaaaagaaggg
agagcctttacattcgctgccagcagggaagtatacaggatcaagaatatacaaaagtat
accaatactgtgatccgctgcaaggaactgccggctatccagtag
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