Micromonospora sp. B006: MicB006_1616
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Entry
MicB006_1616 CDS
T05583
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
micb
Micromonospora sp. B006
Brite
KEGG Orthology (KO) [BR:
micb00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MicB006_1616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
micb03021
]
MicB006_1616
Transcription machinery [BR:
micb03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MicB006_1616
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
Sigma70_r1_1
Motif
Other DBs
NCBI-ProteinID:
AXO33911
UniProt:
A0A385APF8
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Position
complement(1658616..1660205)
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AA seq
529 aa
AA seq
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MTDPRQTGADVRSLTDTLIAHAQSAGGQLTSAQLARTVESAEVTPAQAKKILRALSEAGV
TVVVDGSASTRRRVAAARSATPASRATTAKTTKKAAAPAPKQAPAAEESPAPAPRKATAR
KATTADVAKAAAPAKATKATRATKATVAAKTAAAKPGKADGPEGEIDPEQLAAEIEDVVV
EEPAELTRAAEADAASSATDNDFEWDDEESEALKQARRDAELTASADSVRAYLKQIGKVP
LLNAEQEVELAKRIEAGLYAAERLRAADEGEEKLVRDLQRDLMWISRDGERAKNHLLEAN
LRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAM
ADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAKEMDITPEKVLEIQQYARE
PISLDQTIGDEGDSQLGDFIEDSEAVVAVDAVSFSLLQDQLQQVLQTLSEREAGVVRLRF
GLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatccccgccagaccggcgccgacgttcgctcgctcaccgacaccctgatcgcc
cacgcgcagagcgccggtggtcagctcacgtcggcccagctcgcgcgcaccgtcgagtcc
gctgaggtgaccccggcccaggccaagaagatcctccgcgcgctctccgaggcgggcgtg
acggtggtggtggacggctcggcgagcacccgccgccgcgtcgccgccgcccggtccgcc
accccggcctcccgcgcgaccacggccaagaccaccaagaaggccgccgcgcccgccccg
aagcaggcgccggccgccgaggagtcgcccgccccggccccccggaaggcgaccgcgcgc
aaggccaccacggccgacgtcgcaaaggccgccgccccggcgaaggccaccaaggcgacc
cgcgccaccaaggccacggtggccgccaagaccgccgcggcgaagccggggaaggccgac
ggccccgagggcgagatcgacccggagcagctggccgccgagatcgaggacgtggtggtc
gaggagccggccgagctgacccgggccgccgaggccgacgcggccagctccgccaccgac
aacgacttcgagtgggacgacgaggagtccgaggcgctcaagcaggcgcgccgggacgcc
gagttgaccgcctccgccgactccgtgcgggcgtacctcaagcagatcggcaaggttccg
ctgctcaacgccgagcaggaggtcgagctggccaagcggatcgaggccggcctctacgcc
gccgagcggctgcgcgccgccgacgagggcgaggagaagctggtccgcgacctgcagcgc
gacctgatgtggatctcccgggacggcgagcgggccaagaaccacctgctggaggccaac
ctgcggctggtggtctcgctggccaagcgctacaccggacgcggcatggccttcctcgac
ctcatccaggaaggcaacctcggcctcatccgcgccgtcgagaagttcgactacaccaag
ggctacaagttctccacctacgccacctggtggatccgccaggccatcacccgcgccatg
gccgaccaggcccgcaccatccgcatcccggtgcacatggtcgaggtgatcaacaagctc
ggccggatccagcgcgagctgctccaggacctgggccgcgagcccaccccggaggagctg
gccaaggagatggacatcacaccggagaaggtgctggagatccagcagtacgcccgggag
cccatctcgctggaccagaccatcggcgacgagggcgacagccagctcggcgacttcatc
gaggactccgaggcggtcgtcgctgtcgacgcggtgtcgttctcgctgctccaggaccag
ctccagcaggtcctccagacgctgtccgagcgtgaggcgggcgtggtgcgcctgcgcttc
ggcctcaccgacggtcagccgcgcaccctggacgagatcggccaggtgtacggcgtgacc
cgggaacgcatccggcagatcgaatcgaagaccatgtccaagttgcggcacccctcgcgt
tcccaggtgctccgcgactacctggactga
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