Microbulbifer sp. GL-2: GL2_43160
Help
Entry
GL2_43160 CDS
T07982
Symbol
vacB
Name
(GenBank) ribonuclease R
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
micz
Microbulbifer sp. GL-2
Brite
KEGG Orthology (KO) [BR:
micz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
micz03016
]
GL2_43160 (vacB)
Enzymes [BR:
micz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GL2_43160 (vacB)
Transfer RNA biogenesis [BR:
micz03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GL2_43160 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
MPI_cupin_dom
Rrp44_S1
S1_2
S_4TM
Motif
Other DBs
NCBI-ProteinID:
BBM04242
UniProt:
A0A510IZ77
LinkDB
All DBs
Position
4917768..4919738
Genome browser
AA seq
656 aa
AA seq
DB search
MLNADALKQLSQLKTDIRSSKEFAEGRVRGSNGKFGFVELEDGREAFLPPNEMERVFPGD
QVRVCISEENKGKLTAELDTLINSQLDYLVGQYVQRGQGHFIQPTQNGLTRWIFLPPKAR
GKAQPGEFIACKVNRHPFKDGRAQAKVETVIGKPEMPGIEHAYVVAQYKLPEQFGQAAEK
QAGSIADQITSITAERKDLSELGFVTIDAESTRDMDDALAVTAHEGGWTLHIAIADPSSV
IEEGSHLDQEAFKRAHSQYLPGETLPMLPRNLCEDLFSLIPSELRPVLVVHIDIENDGEI
ASSQYEFAAIRSQHKLSYNQVSQFVVGDETAVPEEQKESLRNLAALYKARAKYRAGHSLA
MEDRPDYEIHLNEQRKIERIEKQDRNIAQRMVEEAMLATNISIGAKLAELQQGCFSVHLG
FREERMGEVRSLLKEMLPEHAEKDLSQLENYLALVKHLETHEDDKMRNLLAVLKRMLRPG
QFDNKAGTHLGLGLGAYATVTSPIRKYNDLHNHRVLRAAKQETSAKNLSDEQIEALQDSL
VRGRQANRALEQWLYTQFMQDKVGQAFTGKIALVNGAGLGVRLDQFGIDGFVRLNGNKKN
LPTFDGKHLILTHDEQSFQLEQSVTVKVVSADVDKRRIAFELVKESSLDSSATENN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgccgacgctctgaaacaactttcacaactgaaaacagatattcgctccagt
aaggagtttgccgagggccgggtacgcggcagcaacggcaaatttggctttgtggagctg
gaagatggacgggaggctttcttaccccccaatgagatggaacgtgttttccctggtgac
caggttcgcgtctgcatttcggaagagaacaaaggcaagctcacagccgagctggatacc
cttatcaatagccaattggactacctggtaggtcaatatgtacagcggggccagggccac
tttatccagcccacccagaacggcctgacccgctggatctttctgccccccaaagcacgc
ggcaaagcacaacctggcgaatttattgcctgtaaagtcaatcgccacccctttaaggat
ggacgtgcccaggccaaagtagaaaccgttatcggtaagccggagatgcccgggatcgaa
catgcctatgttgtggcccaatacaaactgccggagcagtttggccaggcggcagagaaa
caggcgggcagtattgctgatcaaatcacatccatcactgccgaacgcaaggatttgtcc
gagctgggcttcgtaactattgatgcggaaagcacccgtgatatggacgatgctctcgcg
gttacagcgcatgaaggcggctggactttacatattgccattgccgatccttccagcgtt
atcgaagagggcagccacttggatcaagaggccttcaagcgcgcccacagccagtatctc
cccggcgaaaccctgccgatgctgccgcgcaatctgtgtgaagacctcttctccctgata
cccagcgaactgcgcccggtactagtggtacatatagatatcgagaatgatggcgagatt
gcttccagccaatacgaatttgccgctattcgttcccagcacaaactgagctacaaccag
gttagccaatttgtcgtgggtgatgaaaccgctgtgccggaggagcaaaaagagagcctt
cgcaaccttgctgccctatataaagcccgcgccaaatatcgcgcaggccactccctggca
atggaggatcgtcccgactacgagatccacctcaacgagcagcgcaagattgagcgcatc
gagaaacaggatcgcaatattgcccagcgtatggttgaagaagccatgctggcaaccaac
atcagcatcggtgcgaagttggcagaactgcaacagggctgcttctcagtacatctgggc
ttccgtgaagagcgcatgggtgaagtccgcagcctgctaaaggaaatgctgcccgagcac
gctgagaaagatctcagccaactggaaaactacctggcactggtcaaacacctggaaacc
cacgaagacgacaagatgcgcaacctgctcgccgtattgaagcgcatgctgcgacccggt
cagttcgacaacaaagccggcacgcatctgggcttgggcttgggcgcttacgccaccgtc
acttctccaatccgcaaatacaatgacctgcacaatcaccgtgtcctgcgtgcagccaag
caagagacatctgcaaaaaatcttagtgatgaacagattgaagctttgcaggacagcctg
gtacgcggccgtcaggcaaaccgcgccctggagcaatggctctatacgcaatttatgcag
gataaagttggtcaggcgtttaccggaaagatcgccctggtgaacggtgccgggctcggc
gtacgtctggaccagtttggcatcgacggatttgtgcgattgaatggcaacaagaaaaac
ctgccaacttttgacggcaagcatctgatcctgacccatgacgagcagagctttcagctc
gagcaaagcgtcaccgttaaagtggtctctgcggatgtcgataaacgacgtatcgcattt
gagcttgtaaaagaaagctccctagacagcagcgctacggaaaataattaa
DBGET
integrated database retrieval system
