Micromonospora sp. L5: ML5_3117
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Entry
ML5_3117 CDS
T01379
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mil
Micromonospora sp. L5
Pathway
mil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ML5_3117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mil03400
]
ML5_3117
Enzymes [BR:
mil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ML5_3117
DNA repair and recombination proteins [BR:
mil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ML5_3117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADU08634
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All DBs
Position
3270617..3271576
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AA seq
319 aa
AA seq
DB search
MGAADETRAGVSLTNLDQPLFDGAGATKRDLVDYLDAMADRILPELRDRPLSVLRVRPGQ
EPFMQKNLPKYTPGWVRRTEVWAEASHRRISYALCDDRRTLLWFANQRAVEYHPTLARAG
APEHPSHLVLDLDPPEGDAFGAVVRVALLVQQALADAGLAGAVKTSGAKGLHVVVPVDPA
TTAEEAAAATRALAVRTERLDPAAATTAFIVADRGGRVFVDSTRAYGATVVAAYSPRIRP
GAPVSYPVGWTDLESATPADFTVRTVPGLLGDRDPWAEALPAPQRLPADLVEQGRTIPVA
RVQAMHEGKRRAKARREAG
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atgggcgccgccgacgagacccgggccggagtgtcgctgaccaacctcgaccagccgctg
ttcgacggcgccggggcgaccaaacgcgacctggtcgactacctcgacgcgatggctgac
cggatcctgccggaactgcgggaccggccgctgtcggtgctgcgggtgcggcccggccag
gagccgttcatgcagaagaacctgccgaagtacacgcccggctgggtgcgccgcaccgag
gtgtgggcggaggcgtcgcaccggcggatctcgtacgcgctctgcgacgaccggcggacg
ctgctctggttcgccaaccagcgggcggtggagtaccacccgacgctggcccgcgccggt
gcgcccgagcacccgtcccacctggtgctcgacctggacccgccggagggggacgcgttc
ggcgccgtggtgcgggtcgccctgctggtccagcaggcgctcgccgacgccgggctcgcc
ggcgcggtgaagacgagcggcgccaaggggctgcacgtggtcgtgccggtggacccggcc
accaccgcggaggaggccgccgccgcgacccgcgctctcgccgtccgtaccgaacggctc
gacccggcggccgcgaccaccgcgttcatcgtcgccgaccgcggcggccgcgtcttcgtc
gactccacccgggcgtacggcgcgactgtggtggccgcctacagcccccggatccggccc
ggcgccccggtgtcgtacccggtgggctggaccgatctggagagcgcgaccccggccgac
ttcaccgtgcggaccgtgccgggcctgctgggggaccgggatccctgggcggaggcgctg
cccgcgccgcagcgcctgccggcggacctggtcgagcaggggcggaccatcccggttgcc
cgggtgcaggcgatgcacgagggcaagcgccgcgccaaggcccgccgcgaggccgggtga
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