Methylocystis iwaonis: SS37A_13370
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Entry
SS37A_13370 CDS
T09113
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
miwa
Methylocystis iwaonis
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miwa03019
]
SS37A_13370
Enzymes [BR:
miwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SS37A_13370
Messenger RNA biogenesis [BR:
miwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SS37A_13370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BDV33808
LinkDB
All DBs
Position
1411226..1413790
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AA seq
854 aa
AA seq
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MTRPQDALPIDAVLPDIQAALSASPNLVIVAPPGAGKTTRVPLALLDAPWARGGKLILLE
PRRLAARAAASRMATTLGEQIGETVGLRMRLESRVSARTRIEVVTEGVFARMILDDPALD
GVAGVLFDEYHERSLDADLGLALALDAQSGLRDDLRLIAMSATLDGARVSALMGDARTVV
SEGRAFDVETRYLGRDPNERIEDAVARAVLRALREEKGSVLAFLPGQGEILRTASRLAEA
RLEGVDIAPLYGALDRGEQDRAISPAPQGRRKVVLATSIAETSLTIEGVRVVVDSGLSRV
QLYEPDLGLSRLETVRAARASVDQRRGRAGRTEPGVCYRLWDEPQTASLPAFAAPEILAA
DLSSLALDLAAWGVTDPGQLAWLDPPPAPAWKEAVALDQELGALGADGRLTEEGRALRAL
PLPPRLARMVLEAARCGEAERAAELAMLLSERGLGGNDADLSHRLDRLQSDGSKRAKDAR
RLAGNWARMAMAALPPPCPSPAKAGEGTLAISIADEGHALPPLPRSGGGLGRGLSDGALI
ALAYPDRIAKSRGANGDFLMANGRAASLPVEDPLSRAPFLAVAELTGRAAQARILAACAL
AAEEVERIAGARIEARDETVFDPATVSLRRRRFRRLGAIRLSEQNLSVEADAESAQALAR
GIAALGVARLPWTKGQAQLRDRAAFLRRAEGDEWPDLSDAALAESVEEWLAPYIVGRARL
GDIAPGDLDAALAHLLPYDLMRRLDAEAPTHFETPAGSRHALDYAAPNGPLLSVRVQELY
GLSQHPALARGKVPLTLELLSPAHRPIQTTRDLPSFWSGSWNDVKKEMKGRYPRHLWPDE
PAKALPTTRAKPRG
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
ttgacacgcccacaggacgccctccccatcgacgccgtgctgcccgacatccaggcggcg
ctctcggcttctcccaatctcgtgatcgtcgcgccgcccggcgccggcaagacgacgcgc
gtaccgctcgcgctgctggatgcaccgtgggcgaggggcggcaagctcatcctgctggag
ccgcgccgccttgccgcccgcgccgccgcgagccgcatggcgacaacgcttggcgagcag
atcggcgagacggtgggtctgcgcatgcggctcgagtccagggtctcggccaggacccgc
atcgaggtcgtcaccgagggcgtcttcgcgcgcatgatcctcgacgatccggcgctcgat
ggcgtcgcgggcgtgctcttcgacgaatatcacgagcgttcgctcgacgcggacctcggc
ctcgctctggcgctcgacgcccaatcggggctgcgcgacgatctgcgccttatcgccatg
tcggcgacgctcgacggcgcgcgcgtctcggctttgatgggcgacgcgcggacggtcgtc
tccgagggccgcgccttcgatgtcgaaacccgctatctcggccgcgaccccaatgagcgc
atagaggacgccgtcgcccgcgccgtgctgcgcgccctgcgcgaggagaaaggctcggtg
ctggcctttctgccggggcagggcgaaatcctgcggaccgcctcccgccttgcagaggcg
cgattggagggcgtcgatattgcgccgctctatggcgcgctcgatcgcggcgagcaggac
cgcgctatttcgcccgcgccacaggggcgccgcaaggtggtgctcgcgacctccatcgcc
gagacgtcgctgaccatcgaaggcgtgcgcgtcgtggtcgatagcggcctgtcgcgcgtg
cagctttacgagccggatctgggcctctcgcgcctcgagacggtgcgcgccgcgcgggcg
agcgtcgaccagcggcgcggccgcgccgggcgcacggagcccggcgtctgttaccgcctt
tgggacgagccgcagacggcgtcgctccccgctttcgcggcgccggagatattggcggcg
gacttgtcgagccttgcgctcgatcttgccgcctggggcgtaaccgatcctggccagctc
gcctggctcgacccgccgccggcgccggcctggaaggaggccgtggcgctggaccaggaa
ctcggggcgctgggcgccgatgggcggctcacggaagaaggcagagcgttgcgcgcgctt
ccgctgccgccgcgtctcgcccgcatggtgctggaggccgcgcgctgcggggaagcggag
cgggcggcggagcttgccatgctgctttccgagcgcggacttggggggaatgacgcggat
ctgtcgcatcggctggaccggctgcagtcggatgggtcgaagcgggcgaaggatgcgagg
aggctggcggggaattgggcgaggatggcgatggcggcgttgccccctccctgtccctcc
cccgctaaagcgggagaggggacgctcgcgatcagcattgccgatgaaggccacgctctg
ccccctctcccgcgcagcgggggagggctggggagggggctctccgacggcgccctcatc
gcgctcgcttatcccgaccgcatcgccaaatcgcgcggggccaatggcgacttcctcatg
gccaatggccgcgccgcgagccttcctgtggaagacccgctgtcgcgcgccccctttctc
gccgtcgcggagctgacgggccgcgcggcgcaggcgcgcattctagcggcctgcgccctc
gccgccgaggaagtggagagaatcgccggcgcgcggatcgaggcgcgcgatgagactgtt
ttcgaccccgcgaccgtcagcctgcggcgccggcgctttcggcgcctcggcgcgatccgc
ctgagcgagcaaaacctctccgtcgaggccgacgcggagagcgcgcaggcgctggcgcgg
gggatcgccgcgctcggcgtcgcgcgcctgccctggaccaagggccaggcgcagcttcgc
gaccgcgcggctttcctgcgccgggcggagggcgatgaatggcccgatctctccgacgcg
gcgctggccgaaagcgtcgaggagtggctcgcgccttatattgtcggccgcgccaggctg
ggcgacatcgccccgggcgatctcgacgcggcgctcgcccatctcttgccctacgacctc
atgcgccgcctcgacgccgaggcgcccacgcatttcgaaacgccggccggctcccgccat
gcgctcgattacgccgcgcccaacgggccgctgctctccgtgcgggtgcaggagctttac
ggcctttcgcagcatccggcgctggcgcgcggcaaggttccgctgacgttggagctgctc
tcgccggcgcatcggccgatccagaccacccgcgacctgccgagcttttggtcaggctcc
tggaacgacgtcaaaaaagagatgaagggtcgctatccacgccacctctggccggacgag
ccggccaaagccttgccaaccacgcgagcgaagccgcgagggtga
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