Methylocystis iwaonis: SS37A_15060
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Entry
SS37A_15060 CDS
T09113
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
miwa
Methylocystis iwaonis
Pathway
miwa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
miwa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SS37A_15060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
miwa03019
]
SS37A_15060
03400 DNA repair and recombination proteins [BR:
miwa03400
]
SS37A_15060
Enzymes [BR:
miwa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SS37A_15060
Messenger RNA biogenesis [BR:
miwa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SS37A_15060
DNA repair and recombination proteins [BR:
miwa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SS37A_15060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HHH
Motif
Other DBs
NCBI-ProteinID:
BDV33977
LinkDB
All DBs
Position
complement(1598379..1600178)
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AA seq
599 aa
AA seq
DB search
MPSLPPQARALLKSVFGYDDFRPGQAEIIAAVLDGAPVLAVMPTGSGKSMCYQLPAIMEE
ALTVVVSPLIALMRDQVRQMRALGVGVATLNSMNGPEENEEARRAMREGGLRLLFVSPER
LMMDGLLAELKRAKPRRLAIDEAHCVSEWGHDFRPEYREIGRAAEALGNIQVVGLTATAD
AATRDDIARRLFPAPPRLFLHSFDRPNIALNFALKDQPRRQLSRFLERHKGESGIVYCSS
RQRTEDLAAYFAGQGYDALPYHAGLAQETRNRNGDRFLREDGVIAVATIAFGMGVNKPDV
RFVAHADIPSSVESYYQEIGRAGRDGLPADTLTLYGLDDMAFRRRQIDAKDIDEERRRIE
HDRFSALAMLCETPRCRRQTLLAYFAEEAGPCGSCDVCQGKVAVFDGVIPAQKALSAVYR
TGQRFGATHIADVLTGEATETVRRHGHDAIKTFGVGKEHSKTEWASILRQLFAAGALRTA
SAEHGGFAMTPKGEDILFGRETILLRSDPLRRRERREKAAANLDEATDRILSALKRKRRE
LAQEEGVPAYVIFADRTLIDMAEKRPATLDELLTVHGVGERKVARYGDAFLEALEQALR
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgccttccctccccccgcaagcccgcgcgctgctcaaatccgtctttggctatgatgat
ttccgccccggtcaggcggagatcattgcggctgtgctcgacggagccccggtgcttgcg
gtcatgccgaccggcagcggcaaatccatgtgctatcagctgccggcgatcatggaggag
gcgctcaccgtcgtcgtctcgccgcttatcgcgctgatgcgcgaccaggtgcgccagatg
cgcgcgctcggcgtgggggtcgcgacgctcaattccatgaacggcccggaggaaaacgag
gaggcccgccgcgccatgcgcgagggcgggctgcggcttctcttcgtctcgcccgagcgg
ctgatgatggatggcctcctcgcagagctgaagcgcgccaagccccgccgcctcgccata
gacgaagcccattgcgtctcggaatgggggcacgactttcgccccgaatatcgcgagatc
ggccgcgccgcggaagcgctgggcaatatccaggtcgtcggcctcaccgccaccgccgac
gccgcgacccgcgacgacattgcgcgccgcctcttccccgcgccgccgcgccttttcctg
catagtttcgaccggccaaacattgcgctcaacttcgcgctgaaggatcagccgcgccgg
caattgtcgcgttttctcgaacgccacaagggcgagagcggcatcgtctattgctcctcg
cgccagcgcacggaagacctcgcggcctatttcgccgggcagggctatgatgcgctgccc
tatcacgcagggctcgcccaggagacgcgcaatcgcaatggcgaccgcttcctgcgcgag
gacggcgtcatcgccgtcgcgaccatcgccttcggcatgggcgtcaacaagccggacgtg
cgtttcgtggcgcatgccgacatcccgtcatcggtcgaaagctattatcaggagatcggc
cgcgccgggcgcgacggcctgcccgccgatactttgacgctctacggcctcgacgacatg
gcctttcgccgtcggcagatcgacgcgaaggatatcgacgaggagcgccgccgcatcgag
cacgaccgcttctcggcgctcgccatgctctgcgagacgccgcgctgccgccgccagacg
ctcctcgcttattttgccgaggaagcgggcccctgcgggagctgcgacgtctgccagggc
aaggtcgccgttttcgacggcgtcatccccgcgcaaaaggcgctttcggccgtctatcgc
accggccagcgcttcggcgcgacccatatcgccgacgtgctgacgggcgaggccaccgag
accgtgcgccgccacggtcatgacgcgatcaaaaccttcggcgtcggcaaggaacattcg
aaaaccgaatgggcctcgatcctgcgccagctcttcgccgcgggcgccttgcggacggca
agcgcggaacatggcggcttcgcaatgacgcccaaaggcgaggatattctcttcggccgc
gagacgatcctgctgcgcagcgaccccttgaggcgccgcgagcggcgcgagaaagcggcg
gccaatctcgacgaggcgacggaccgcattctctccgcgctgaaacgcaagcggcgcgag
ctcgcccaggaggaaggcgtgcccgcttatgtgatctttgccgaccgcacgctgatcgac
atggccgaaaagcggcctgcgacgctcgatgaactgctgacggtgcatggcgtcggcgaa
agaaaagtcgcccgctacggcgacgccttcttggaggcgctggagcaggcgttgcggtag
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