KEGG   Manis javanica (Malayan pangolin): 108386102
Entry
108386102         CDS       T06054                                 
Symbol
HMGB1
Name
(RefSeq) high mobility group protein B1
  KO
K10802  high mobility group protein B1
Organism
mjv  Manis javanica (Malayan pangolin)
Pathway
mjv03410  Base excision repair
mjv04140  Autophagy - animal
mjv04217  Necroptosis
mjv04613  Neutrophil extracellular trap formation
Brite
KEGG Orthology (KO) [BR:mjv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108386102 (HMGB1)
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    108386102 (HMGB1)
  09143 Cell growth and death
   04217 Necroptosis
    108386102 (HMGB1)
 09150 Organismal Systems
  09151 Immune system
   04613 Neutrophil extracellular trap formation
    108386102 (HMGB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mjv03036]
    108386102 (HMGB1)
   03400 DNA repair and recombination proteins [BR:mjv03400]
    108386102 (HMGB1)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mjv04147]
    108386102 (HMGB1)
Chromosome and associated proteins [BR:mjv03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    108386102 (HMGB1)
DNA repair and recombination proteins [BR:mjv03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     108386102 (HMGB1)
   MMR (mismatch excision repair)
    Other MMR factors
     108386102 (HMGB1)
Exosome [BR:mjv04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   108386102 (HMGB1)
SSDB
Motif
Pfam: HMG_box HMG_box_2 NOA36 Nop14 Nucleo_P87 Radial_spoke PPP4R2 RNA_pol_3_Rpc31 DDHD
Other DBs
NCBI-GeneID: 108386102
NCBI-ProteinID: XP_036859797
LinkDB
Position
Unknown
AA seq 164 aa
MSAKEKGKFEDMAKADKARYEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRP
KIKGEHPGLSIGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRAKGKPDAA
KKGVVKAEKSKKKKEEEEDEEDEEEEEEEEDEEEEDEEEDDDDE
NT seq 495 nt   +upstreamnt  +downstreamnt
atgtctgctaaagagaaaggaaaatttgaagacatggcaaaggcagacaaggcccgttat
gaaagagaaatgaaaacttacatccctcctaaaggggaaacaaaaaagaagttcaaggat
cccaatgcccccaagaggcctccttcggcctttttcttgttttgttctgagtatcgccca
aaaatcaaaggagagcatcctggcctatccattggtgatgttgcaaagaaactgggagag
atgtggaataacactgctgcagatgacaagcagccttacgaaaagaaagccgctaagctg
aaggaaaaatacgaaaaggatattgctgcataccgagctaaaggaaagcctgatgccgca
aagaagggagttgtcaaggctgagaaaagcaagaaaaagaaggaagaggaggaagatgag
gaagatgaggaggaggaggaggaggaggaggatgaggaggaggaagatgaggaggaagat
gatgatgatgaataa

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