Methylomonas koyamae: MKLM6_3077
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Entry
MKLM6_3077 CDS
T05118
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
mko
Methylomonas koyamae
Pathway
mko03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mko00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MKLM6_3077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mko03019
]
MKLM6_3077
03400 DNA repair and recombination proteins [BR:
mko03400
]
MKLM6_3077
Enzymes [BR:
mko01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MKLM6_3077
Messenger RNA biogenesis [BR:
mko03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MKLM6_3077
DNA repair and recombination proteins [BR:
mko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MKLM6_3077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
HTH_40
Sigma70_r4_2
ResIII
HTH_28
HTH_22
HTH_23
HTH_29
GerE
HTH_7
Motif
Other DBs
NCBI-ProteinID:
ATG91276
UniProt:
A0A291IM57
LinkDB
All DBs
Position
complement(3488116..3490251)
Genome browser
AA seq
711 aa
AA seq
DB search
MTHNPALDTLRSVFGYDSFRGQQQHIIEQLIAGRDVLVLMPTGGGKSLCYQIPALVMDGV
GIVISPLIALMQDQVSALHQLGVRAAYLNSTLSLEQVRDIEQQLQNGELDLLYIAPERLS
NPRTQALFNRCKIALFAIDEAHCVSQWGHDFRADYLQLSVLHQQFPTVPRIALTATADER
TRQEIIARLALEQAHVFVSGFDRPNIRYRIVQKDNARQQLLSFIRSEHPGDTGIVYCLSR
KKVEETAEWLSQKGLRALPYHAGMDHQQRQKNQHQFLMEDGLIIVATIAFGMGIDKPNVR
FVAHLDLPKSVEAYYQETGRAGRDGLPANAWMAYGLQDVLTLRQMLGTSNADAAHKRVEL
HKLDAMLALCETVGCRRQALLGYFGDVLEQGCGNCDTCLEPVATWDGSLAAQQALSCIYR
TGQRFGATYLIDVLLGKDDERIKQFGHDRLSTFGIGKALDEKRWRSVFRQLVAKSLVEID
FEGHGSLRLADACRPVLRGEQTLMLRKDVQTAKTRRDKYEKRQPGGAADSALWEALRAKR
KQLADEQDVPPYVIFHDATLMAMVEARPHNHEQLGMISGIGQRKLELYGDEFLAVLAEFD
TAAEPGSRSDTVAESLDLFRLGYSVEQVARQRGVTEDTVYNHMAKALESGLVELGDVLNL
SPAELGDIEAALLALPHEQRNALKPVYEQLAGAYSYGILRCVRAALQRQTG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgacccataatccagcgctcgacacgctacgtagcgtattcggctacgacagttttcgc
ggccagcagcagcacatcatcgaacaactgattgccggccgcgacgtcttggtgctgatg
ccgaccggcggcggcaagtctttgtgttaccagattccggcgctggtgatggacggcgtc
ggcatcgtcatctcaccgttgatcgcgttgatgcaagatcaggtcagcgcgttgcaccaa
ctcggcgtcagagccgcatacctgaattccaccttatcgttggagcaggtgcgcgatatt
gagcaacagttgcaaaacggcgagttggatttgttgtacatcgccccggaacggctgtcc
aatcccagaactcaagccttgttcaaccgctgtaagattgccttgtttgcgatagacgag
gcgcattgcgtgtcgcaatggggccacgacttccgcgccgattacctgcaattatcggtg
ctgcaccagcaatttccgaccgtgccgcgcattgccttgaccgcaaccgccgacgaacgt
acccgccaggaaatcatcgcccgcttggccttggaacaagcccacgtctttgttagcggt
ttcgaccggcccaatatccgctaccggatcgtgcaaaaagacaatgcccgccaacagtta
ctgagctttatccgcagcgagcatcccggcgataccggtatcgtttattgcctgtcgcgc
aaaaaagtcgaggaaaccgccgaatggttgagccaaaaaggcttgcgggcgttgccttac
cacgccggtatggaccaccagcagcggcagaaaaaccagcatcagtttttgatggaggat
ggcctgattatcgtcgccaccatcgccttcggcatgggcatcgataaaccgaacgtgcga
ttcgtcgcccatctggatctgccgaagagcgtggaggcttactaccaggaaaccggccgc
gccggccgcgacggcttgccggccaatgcctggatggcttacggcttgcaggacgtattg
accttgcggcagatgctcggcacatccaacgccgacgccgcccataaacgggtcgaattg
cacaaattggatgcgatgttggccttgtgcgaaacggtcggttgccggcgccaggccttg
ctcggctatttcggcgacgtgctggagcagggctgcggcaattgcgatacctgcctggaa
ccggttgcaacctgggacggcagtctggccgcgcagcaggccttgtcctgcatctaccgc
accggccagcgcttcggcgccacctacttgatcgacgtcttgctcggtaaggacgacgag
cgcatcaagcaattcggccacgaccggctatcgactttcggcatcggcaaggccctcgac
gaaaaacgctggcgttccgtgttccggcaattggttgccaaatcgctggtagagatcgac
ttcgaaggccacggcagcctgcgcttggccgacgcctgtcggccggtgttgcgcggcgag
caaaccttgatgctgcgcaaggacgtgcaaaccgccaagacccggcgcgataagtacgaa
aagcgccagccgggcggcgcggcggacagtgccttgtgggaagcgttgcgggccaagcgc
aaacagttggccgacgagcaggatgtgccgccgtacgtgatctttcacgatgcgacctta
atggcgatggtcgaggcgagaccgcacaaccacgaacagctcgggatgatttccggcatc
ggccagcgcaagctggaattgtacggcgacgagtttttggccgttctggccgagttcgat
accgcagccgagcccggctcccgctccgataccgttgccgagagcctggatttgtttcgc
ttgggctatagcgtggagcaggtggcgcggcagcggggagtaaccgaggatacggtgtac
aaccatatggcgaaagccttggagtccggtttggtggaactgggcgacgtgttaaacctg
tcgccggcggaactcggcgacatcgaagccgctttgttggccttgccgcacgagcaacgc
aatgcgttgaagccggtctacgagcaattggccggagcctacagttacggcatattgcgc
tgcgtccgcgccgcgttacagcggcagactgggtag
DBGET
integrated database retrieval system